Gene detail

Detailed information of amic_s0023.g246.t4 in Acropora microphthalma

Genomic Location: sc0000023_pilon:2755574...2772728
NR annotation: XP_029189352.2, DNA polymerase epsilon catalytic subunit A-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0023.g246.t4

ATGGTCCTTCTAAATAGTGGGAGAAGAAAGAAAGGCGATGGAGAGCAAAATGAAGAAAGCGACTCTCGTTCGCGGTTCAGACCCGATGAGGGTGCGTCAACTGAAGCAAGAATTAACAGAATTCAATCAAATGATGTTTTGGACGTCAAGTATGGCTTTGATCGCTACAAAGACTCAGTGGATAGATTGGGATGGCTTATCAATATGCACCCAACAGAGATAATTGACGATGACAAGAAGTTGATTAGTGCAGTTGACCTTTATTTCATTCAAGATGACGGAGGCCGTTTCAGGGTACCTTTGCCCTACAAACCTTATTTCTACATCCTAGCAAAGAAGGACACTGATAGGGAAGTAGCCACTTTCTTGAACAGAAAGTTTGGTGGCTTGATTGCAAGTATTGAAACGGTTGCCAAGGAAGATCTTGATTTGAATAATCATTTGGTTGGGCTTAAAAGGAATTACATCAAGTTATCATTTCATACTGTGAATGATTTGATGAAAGTGAAGAGGGACATTATGCCGGCTGTTCGAAAGAACAAAGAACAAGCCAAAACAAATGCAGCTTACAACATTGTGATGGGTGCTGACATGAGTGAAGATGAAATGATTGCTGCAAACAGAAGGAATGCTGATCAAATGTCAAATGTGGTTGACATCAGGGAGTATGACGTACCATACCATGTTCGAGTTGCTATTGATCTTAAAATTTTTGTGGGTCACTGGTATAATGTGAAGATACATGGTGGAATTCATCCTGAGTTGGCAAGGAGAGATGACCTTTTGGACAGACCAGACCCTGTTGTACTGGCATTTGATATTGAGACTACCAAGTTGCCATTAAAATTCCCTGACTCCAGCACTGACTCCATTATGATGATTTCTTACATGATTGATGCACAGGGTTACTTAATAATCAACAGAGAAATAGTCTCTGAGGATATTGAAGACTTTGAATATACCCCAAAACCAGAGTATGAAGGACAATTTACAGTCATAAATGAGCCTGATGAGGCAAGCCTGTTGAACAGATTCTTTGAACATATCCTTGAAGTCAAACCAAACATCTTTGTGACATATAATGGAGACTCCTTTGATTGGCCATTTGTTGAAGCTCGTGCTGCTCATCATGGTGTTGGCATGTATGAAGAAATAGGGTTTGTTGCTGATGCTCAGGGAGAGTACAAAAGCAGACCTGCAATCCACATGGATGCCTTCCGATGGGTAAAACGAGACAGTTATCTTCCTGTTGGCAGTCAAAATTTGAAGGCCACCACTAAAGCCAAGCTTCGTTATGATCCTATTGAACTTGATCCAGAGGAAATGTGCCGTATGGCCAGTGAACAACCACAGGAACTGGCTAATTACTCTGTGTCTGATGCTGTAGCCACTTACTATCTTTACATGAAATATGTTCATCCTTTTATCTTTGCCTTATGTACCATCATCCCAATGGAACCTGATGAGGTTCTTAGGAAAGGCTCAGGAACATTGTGTGAAGCTCTATTAATGGTGCAAGCTTTTCATGCAAACATCATATATCCCAACAAACAGGAACAGGTGTTCAATAAGTTGACCAATGATGGACATGTTTTAGACTCTGAAACTTACGTTGGAGGGCATGTTGAAGCTTTGGAGTCTGGCGTGTTTAGAAGTGACATCCCTTGTAGATTCCGTTTGGTTCCAGATGCATTTCAGAAATTAATTGACAGCGTGGAGAGCACCATGCGACATGCCATTGTTGAAGAGGAACACATTTCTTTTGAGACTGTCACAAATTTTGATGAGGTCTGTTCTGAGATCAAGGACAAACTTTGTAGTTTGCGAGATACTCCTGCTAGGCTTGAAAACCCTTTGATTTATCATCTTGATGTGGGTGCCATGTATCCAAATATTATTCTCACCAATAGACTTCAGCCCTCAGCAATGGTGGATGAAGCGACTTGTGCTGCATGTGACTTCAACAAACCTGGAGCAAGATGCCAGAGGGTCATGAACTGGACCTGGAGGGGAGAATTTATGCCTGCAAGTCGCAATGAATACCAAACAATAAAGCAGCAGTTAGAAGTAGAAAAAATTCCTGGTGTTAATCCAGGAGACCCAACACGATCTTTCCATTCCCTTACCCTTGCTGAACAAGCACAGATGGAAAAGAAACGACTGCAAGACTATTGTCACAAAGCTTACAAGAGAGTAAAAATGAATAGACAAGAAATCCGTGATACCATGATCTGCCAGCGGGAAAATTCCTTTTATGTTGACACCGTGCGAGCATTCCGTGATCGTCGATATGAGTTTAAGGGATTGCTGAAGGTTTGGAAGCGCAAGCTAGGAGCTGCTTTGCAGAGTGGAGATGCTGAGGAAATCAAAAGTTGTCAAAGCAAGGAGGTGTTATATGATTCTCTTCAACTGGCTCACAAATGTATTTTGAACTCATTCTATGGCTATGTTATGAGAAAGGGTGCTCGGTGGTATTCTATGGAGATGGCTGGCATTGTCTGTCATACAGGAGCAAACATTATCAGACAAGCCAGGGAAATTGTGGAGCAGATTGGACGGCCCCTTGAACTGGATACTGATGGAATTTGGTGTGTTCTGCCAGCAAGCTTCCCTGAAAACTTTCAGATCACAACAACAAATCCAAAGAAAAGCAGAATTACTATTTCTTATCCTGGAGCGATGTTAAATATCATGGTTAAGAACAGCTACACAAATGACCAGTATCATGAACTTACAGACCCTGAAAACTTGACATATGAAATTCGGAGTGAGAACTCAATCTTTTTTGAGGTTGATGGTCCTTACAAAGCGATGATTCTTCCAGCTTCAAAGGAGGAAGGAAAGAAGCTAAAGAAGAGGTGTGAATACCCATTATTAAATTTTGGGTTATTTTTGAGTTTCAAACCAAAGTTATGTCCTCTTGATTTGTTCTTTCATTGGAGGATAGGTGTCATACAGCAAGTGAGGTGA

Transcript

amic_s0023.g246.t4

TTGACAGGTGATTCAATCTTGAATTGTGACGTAATGAATCTACCGAATCAGATGCAGACGCCGGGAGAGGCTCTGTGGAAGAATACCTAGCTAAAATTGATCGACTTCGCTGGACTGAAGAGTTACGCTCAATGTACAAGGAGAAATATGGCCTTGTCGAGTGAGAAGCTTCTTCAAAAGTTCAAAATGAAATTAACCCCGAAATGTGTAGTCATGTTACAATAAATGTTCATTGAAATTTCGTATAGAGCTCTGGGTCAGAAGTGGAACTTCGTGTCAAGTAAAATATCACTCTTTTTTTGTTTGAAATACGCGCGGTTACCAAGCGGTAGGTAGTTTACCTATTCACCGACACCGCGGGGAAGAATAATGACAAAGCATGAGACGTTTTTGTCAACACTCTCTATGGGGCTTTAAGTTCACAATGGAAAGTGCTGCCTCCGCGATACCCAGCTTATTGTTTCTTTTGCCTTGCAAGCCATTGTTTTTTACACTCCCTGTAAACTTTGAAATATTCTTCGCACTTGCTATCGTCAAAGTTATTTTGAGTTACACATTTTAACGAGGCGTCCATTGCACCCGAGCAAGAATAACCGTCGACAAATTTGTGAGCATTAGGGTCCAGTCCAGGGGTATATCCTTTCGGTCGATTCATCCACACGTAAATAATGATGGCGTTTTGGGGATATTAAAGAAGAATACGGTCTCTCTTATCCGCAAAACAGCTTTTTCTTGTTTGGTGGGGTAATAGTTCGATTTCCAGCTATTGTGAGCGACTGTCCCAATCTTCCAATTATTTCGGACTTACAAGACGAGCCTTCCACTCCGGATCACGCAATCTGTCTGGGAGAAGTTAGATGAAAGTATCCGAGGCAGAAGTGAGGTCTCAATGGAAATGATCACTCGTGCAATGTAAGTCTTGAGAGTGAAATACCGTAATTCCGTTGAGAAGAGGGTAGGTGAAGTTTATTTTCTTTGCGTTTTACCCCCACCCCCACGCCAGATAACTTTGCTACTTGTTCGGCGGCTTCATTTTAAGAACATGAGCAATAGGTTTTGTACTTCCCGCCAAATTGAAAAATTTAACAGCCCTTCGATTCTAGTTCGATTGGATTTTGTCGTGGTCTCAAATTGTTTTCGTGGATAACTAGGATATCAAGCTAACTCTGGGAAAACGAATATTCCAGATAAAGAGTCGGGAATGCAGGTATGGTCCTTCTAAATAGTGGGAGAAGAAAGAAAGGCGATGGAGAGCAAAATGAAGAAAGCGACTCTCGTTCGCGGTTCAGACCCGATGAGGGTGCGTCAACTGAAGCAAGAATTAACAGAATTCAATCAAATGATGTTTTGGACGTCAAGTATGGCTTTGATCGCTACAAAGACTCAGTGGATAGATTGGGATGGCTTATCAATATGCACCCAACAGAGATAATTGACGATGACAAGAAGTTGATTAGTGCAGTTGACCTTTATTTCATTCAAGATGACGGAGGCCGTTTCAGGGTACCTTTGCCCTACAAACCTTATTTCTACATCCTAGCAAAGAAGGACACTGATAGGGAAGTAGCCACTTTCTTGAACAGAAAGTTTGGTGGCTTGATTGCAAGTATTGAAACGGTTGCCAAGGAAGATCTTGATTTGAATAATCATTTGGTTGGGCTTAAAAGGAATTACATCAAGTTATCATTTCATACTGTGAATGATTTGATGAAAGTGAAGAGGGACATTATGCCGGCTGTTCGAAAGAACAAAGAACAAGCCAAAACAAATGCAGCTTACAACATTGTGATGGGTGCTGACATGAGTGAAGATGAAATGATTGCTGCAAACAGAAGGAATGCTGATCAAATGTCAAATGTGGTTGACATCAGGGAGTATGACGTACCATACCATGTTCGAGTTGCTATTGATCTTAAAATTTTTGTGGGTCACTGGTATAATGTGAAGATACATGGTGGAATTCATCCTGAGTTGGCAAGGAGAGATGACCTTTTGGACAGACCAGACCCTGTTGTACTGGCATTTGATATTGAGACTACCAAGTTGCCATTAAAATTCCCTGACTCCAGCACTGACTCCATTATGATGATTTCTTACATGATTGATGCACAGGGTTACTTAATAATCAACAGAGAAATAGTCTCTGAGGATATTGAAGACTTTGAATATACCCCAAAACCAGAGTATGAAGGACAATTTACAGTCATAAATGAGCCTGATGAGGCAAGCCTGTTGAACAGATTCTTTGAACATATCCTTGAAGTCAAACCAAACATCTTTGTGACATATAATGGAGACTCCTTTGATTGGCCATTTGTTGAAGCTCGTGCTGCTCATCATGGTGTTGGCATGTATGAAGAAATAGGGTTTGTTGCTGATGCTCAGGGAGAGTACAAAAGCAGACCTGCAATCCACATGGATGCCTTCCGATGGGTAAAACGAGACAGTTATCTTCCTGTTGGCAGTCAAAATTTGAAGGCCACCACTAAAGCCAAGCTTCGTTATGATCCTATTGAACTTGATCCAGAGGAAATGTGCCGTATGGCCAGTGAACAACCACAGGAACTGGCTAATTACTCTGTGTCTGATGCTGTAGCCACTTACTATCTTTACATGAAATATGTTCATCCTTTTATCTTTGCCTTATGTACCATCATCCCAATGGAACCTGATGAGGTTCTTAGGAAAGGCTCAGGAACATTGTGTGAAGCTCTATTAATGGTGCAAGCTTTTCATGCAAACATCATATATCCCAACAAACAGGAACAGGTGTTCAATAAGTTGACCAATGATGGACATGTTTTAGACTCTGAAACTTACGTTGGAGGGCATGTTGAAGCTTTGGAGTCTGGCGTGTTTAGAAGTGACATCCCTTGTAGATTCCGTTTGGTTCCAGATGCATTTCAGAAATTAATTGACAGCGTGGAGAGCACCATGCGACATGCCATTGTTGAAGAGGAACACATTTCTTTTGAGACTGTCACAAATTTTGATGAGGTCTGTTCTGAGATCAAGGACAAACTTTGTAGTTTGCGAGATACTCCTGCTAGGCTTGAAAACCCTTTGATTTATCATCTTGATGTGGGTGCCATGTATCCAAATATTATTCTCACCAATAGACTTCAGCCCTCAGCAATGGTGGATGAAGCGACTTGTGCTGCATGTGACTTCAACAAACCTGGAGCAAGATGCCAGAGGGTCATGAACTGGACCTGGAGGGGAGAATTTATGCCTGCAAGTCGCAATGAATACCAAACAATAAAGCAGCAGTTAGAAGTAGAAAAAATTCCTGGTGTTAATCCAGGAGACCCAACACGATCTTTCCATTCCCTTACCCTTGCTGAACAAGCACAGATGGAAAAGAAACGACTGCAAGACTATTGTCACAAAGCTTACAAGAGAGTAAAAATGAATAGACAAGAAATCCGTGATACCATGATCTGCCAGCGGGAAAATTCCTTTTATGTTGACACCGTGCGAGCATTCCGTGATCGTCGATATGAGTTTAAGGGATTGCTGAAGGTTTGGAAGCGCAAGCTAGGAGCTGCTTTGCAGAGTGGAGATGCTGAGGAAATCAAAAGTTGTCAAAGCAAGGAGGTGTTATATGATTCTCTTCAACTGGCTCACAAATGTATTTTGAACTCATTCTATGGCTATGTTATGAGAAAGGGTGCTCGGTGGTATTCTATGGAGATGGCTGGCATTGTCTGTCATACAGGAGCAAACATTATCAGACAAGCCAGGGAAATTGTGGAGCAGATTGGACGGCCCCTTGAACTGGATACTGATGGAATTTGGTGTGTTCTGCCAGCAAGCTTCCCTGAAAACTTTCAGATCACAACAACAAATCCAAAGAAAAGCAGAATTACTATTTCTTATCCTGGAGCGATGTTAAATATCATGGTTAAGAACAGCTACACAAATGACCAGTATCATGAACTTACAGACCCTGAAAACTTGACATATGAAATTCGGAGTGAGAACTCAATCTTTTTTGAGGTTGATGGTCCTTACAAAGCGATGATTCTTCCAGCTTCAAAGGAGGAAGGAAAGAAGCTAAAGAAGAGGTGTGAATACCCATTATTAAATTTTGGGTTATTTTTGAGTTTCAAACCAAAGTTATGTCCTCTTGATTTGTTCTTTCATTGGAGGATAGGTGTCATACAGCAAGTGAGGTGATTGACAAAGGTAGCAATTGCCAAGaggtaaccatggtgacctagtcac

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q07864	DNA polymerase epsilon catalytic subunit A OS=Homo sapiens OX=9606 GN=POLE PE=1 SV=5
Q9WVF7	DNA polymerase epsilon catalytic subunit A OS=Mus musculus OX=10090 GN=Pole PE=1 SV=3
Q9VCN1	DNA polymerase epsilon catalytic subunit 1 OS=Drosophila melanogaster OX=7227 GN=PolE1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002978 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03104 all species →	DNA_pol_B_exo1	DNA polymerase family B, exonuclease domain	Family	Interproscan
PF00136 all species →	DNA_pol_B	DNA polymerase family B	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR006133 all species →	Domain	DNA-directed DNA polymerase, family B, exonuclease domain	Interproscan
IPR023211 all species →	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR029703 all species →	Family	DNA polymerase epsilon catalytic subunit	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR006172 all species →	Family	DNA-directed DNA polymerase, family B	Interproscan
IPR006134 all species →	Domain	DNA-directed DNA polymerase, family B, multifunctional domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10670 all species →	DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006272 all species →	Biological Process	leading strand elongation	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006287 all species →	Biological Process	base-excision repair, gap-filling	Interproscan
GO:0006297 all species →	Biological Process	nucleotide-excision repair, DNA gap filling	Interproscan
GO:0008310 all species →	Molecular Function	single-stranded DNA 3'-5' DNA exonuclease activity	Interproscan
GO:0008622 all species →	Cellular Component	epsilon DNA polymerase complex	Interproscan
GO:0045004 all species →	Biological Process	DNA replication proofreading	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0023.g246.t4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.