Gene detail

Detailed information of amic_s0023.g302.t1 in Acropora microphthalma

Genomic Location: sc0000023_pilon:3297619...3304020
NR annotation: XP_029188929.2, oligoribonuclease, mitochondrial-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0023.g302.t1

TTTCCACGATTTTTCGGCTTTCACTTTCTAGAGGCTGTCGCAGTTTTTTGGCAATTAATTCCTCACCAATTAGATTTTTCTCACAGAATGATCCAACTGATACAATGACGCATAAAAGGCTTGTGTGGGTAGATTTGGAGATGACTGGTCTGGATGTTGAAAAATGTCACATTATAGAAATGGCCTGCCTTATTACGGATGAAAACCTTAATGTCATCCAAGAGGGACCTGAGGTGGTCATTCATCAACCTGATTCTGCATTGGATGCAATGGATAAGTGGTGCACTAAACATCATGGAGAGTCTGGTTTAACAGCTGCAGTAAGAGCTTCCAAAATCAGCTTGGAACAAGCTGAAGAAACCTTTTTGGATTTTGTCAAGCTGCACACCCCACCGAAAAAGTGCCCTTTGGCTGGAAACAGTGTTCATGCCGACAGAAGATTCCTGGAAAAGTATATGCCACGATTTATGGACCATCTTCATTACAGAATTGTGGATGTCAGTACAATTAAGGAGCTTTGCTGGAGATGGTACCCAAAAACATACCAGCAGGTTCCAGAAAAGAAGGAAAAACACAGGGCACTAGAGGACATCAAGGAAAGCATCGCTGAACTGCAATTTTACAAGCAGGCAATATTTAAGTAACTTTTATATCTTAACAAAGAGCAAATTATCGTATGCGCCAAATAGATTCACATGAAAAGATGTCTAGTTGAAACTTAAACTCCGGTCTCCATTATGAATCTGACGTTCTGAGGAGTAATTCTCTTTATGCGTGCGGTTTCCGGATTTTTCTCTCTTGAACGTTGGCACCCACAAAAATCCAACCACGAATGAACAATTTCCCTCAATCCGTTGCGGTAACTTCCAATGAATGCGAAACAGATCACAGGGTTGATTGAAGTCGAAAGGAAAAACATGAGATCGCCAATAAACGACAGCGGTTTTTCCGCATTGCAAGGTAATTTAATGTTATACTGCTGAAAAGTGTTTTGCACTGTTACTGGTAGGGTACAGATGTAAAATGCGGCAAGAATGCATAGACTCATTCTAAAGGCTCGTCTTTTTCTGGGATTCATCTTGGTCTTCGAGTTAGCGCCGCTCAGCGTTTTGTCTTTTTTTCTCAGCATCACTGCTATTAAGCAATATAATAACGCCAGGACAGCCATGGGAAAAACGTGTATTAGATAGAGGTGTGTTTTACCGTCCATGAATGACCAGGTATCGTTGCTAACAGATTTACAGGAAGTTTCCTTGGTATGCTTATCATAAGCTAACTCATACGCGAACATATCTGGTAAATTTACTGCGATTGCTGCTAACCACGTAGACACTATAGCATAAGTACGAAATCTCGTCGAAAGAAGATGTGCTTTCATTGGTAGAACAACTGCCACAAAGCGATCCAATGCGATCCAAATACAGCTTCCCACTGACACAGATACTGAGATGTGCCCCATGTAGTAAGTTAACTTGCAGAAAACTAAGCCTGCAGTTCCAGTGATGAGCCATTGGATTGAACTCTTTGCCATGTTTGTCGCCTCCACTGATATATCGCAAAGTGCATAAATCAGATCAGAAAATGCCACATTGACGATAAAATAATTAACAGTCCTTCTTAGTTCCTTGTGTTTATACACAGTGATTATGATCAAAGTGTTTCCCACAAGATTCATCAAAATGACAACTGATAAGGCGAGCATTACGCTGGTTTTCACAAGTGGTGAATTGTCAAACATGTCACACTTCGCGTTTTGGTTGTTAGAAGAGAGAGCTACTCGGCTCAGAATGTGAGAGTTAAATGGAAAGAGCACCTGCCGTGAACAGAGTTAGATCTACCTTCAATTTCATGTGTGTAATATTTAACTTTCAGCTCAAATACAAATGAGACAAACAAAGCCTTTTAATAATGAACTTTCTATTTTATCGTTAATATGAGCAATACAGATCAATTGGAAATTGATATGGATTCGGGCAGCGGCTTGTATTCAAGTTATACAATGGGACAAGAAGATTGAATATGATTGCCACCACGGGATCAAACTTTATCTGTGATGATACTAAACGAACCTGACCACATGTAATATATAGCTTTTGAATGGACACTAGACACCTGCTTTATATTTTGAATGTTAAATAAAGTATAGAGCTGCCTCTTATTTAGTCGGTTAGAGCACAAACATTGTAATTCTGTCATAAACTGAAGTATTTGAGTGCTGTGAAGTTAATCTCGCCTAGTGTTGTGTTTTCGTTGGTCACTTGCCGGATTTCAAATAGGACAAGCTGATCAAAGAAAGGAAATTCATGATTTTCTTAAAGAAAATAATAATCCTCGCGTTGACCATCTCATTGTATCCTGGGGTAGCTTGTTATCGTGGACTGTATATATTTCATCAGATTGCATGCCCTTATTATAAAAAGGTATTAAGTTATTTCAAAGATTATCTATTCGCTTTTTAGAACTTATTTGACATCGGACCTGAAAAATATTCGCTCAAGGCTTTATTATTTGAAAGGAATGATTAGTCATTCCTTGAGAGCTGTAATTGGCTATGCAGATGAATGTATTGTAATCAAATATTTATTTGTGGGTGTGGCCAGAttttgtttttgcttttccattttttgtgcaagttttgcttttCAAAACATCTTAATGATTAAACTTACGTTTGATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2VE52	Oligoribonuclease, mitochondrial OS=Bos taurus OX=9913 GN=REXO2 PE=2 SV=1
Q9Y3B8	Oligoribonuclease, mitochondrial OS=Homo sapiens OX=9606 GN=REXO2 PE=1 SV=3
Q9D8S4	Oligoribonuclease, mitochondrial OS=Mus musculus OX=10090 GN=Rexo2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005349 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00929 all species →	RNase_T	Exonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR022894 all species →	Family	Oligoribonuclease	Interproscan
IPR013520 all species →	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11046 all species →	OLIGORIBONUCLEASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13288	orn, REX2, REXO2; oligoribonuclease	EC:3.1.-.-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.