Gene detail

Detailed information of amic_s0023.g308.t1 in Acropora microphthalma

Genomic Location: sc0000023_pilon:3369797...3389538
NR annotation: XP_015767680.1, PREDICTED: uncharacterized protein LOC107346416 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0023.g308.t1

CTAAAGCAAAAAAGTGTTCTTTGTCCAGCGTTTACTGAAAAGGTGATGATACCTGATCACAAGCGTGCGACCAAAGATTTTACTTAGTTGATTTTGAAACACAAGAGCATATGAAACGCATCATCAGATTACAAGTTCCTTCGGAGCTAAATTAAACAACTAGCAACGACTTCGCAACTCCAAGAAAGAATTCTCGAAGATACTACCTTGTTTGGCCGGATAGAGCACTTGATCGCGAAAAATAACATAAGAGAAAGCTTTCCTGCATCGAAGAGTTCCTGTAGAAGTTTTTGGGGTTGAGTTACACGTTCTCTGTGCTCCGATCGTCACCGCAAAAAACGTCCCGCAGGTAGCGACTGATTGAACATGAAGGAAGTGCCATTGAAGGGTCAATAGACAAGAAACATGAAAGTATAATGCAGTCAATTCAAGCATATGCCGTTTTTGTGGTCTGTTGCATTCTCCACTGCACCACGGGACAACATCCTGCAACACGATTTACACAAGAGCCTCCAAGAACTGTGAGTGGAATCCTGGGATATGACGTCACTTTTCATTGGACGTTTTCATTTGCGGTTGATAAAGATTGGAATGACTTTACACAAATCTACTGGGGACTAACAGACAACGATAAGAGTGTCACAGATAAATACATGACGGTCTTGAAAGATGGAAGAGCAATAGTTAATTACCAACTTAAACCCTTAAGTCTACAATCCAGACTGGGCGTTACAAAAAACATCAGCAAAGACAGGTGTAGTCTGGACTTTGTGTTGAAGAACGTGACCAAGAGAGATGCCACTTTAGCGTATGGCTGTACAGCCACCGTTTTCGGAAATCCTATCTGGAATGGGCCTATTTATCTTGTCCTTCGAGTTCCGCCCAGCTTTACTCTCCGATCGAATTCAACTATGGAGGTAGAGGAAGGCGAACCTGTCAATTTGCTTTGTGGTGCAACTGGGGACCCTGTGCCTCTAATACAATGGAAACGGCAAAGTAAGCCTCTACAAAGTAGTAAAAGAACCGCTAATCTTAGCATTGCCAAAATTAAACTCAAGAATGGTGGTATCTATACATGCACTGCAAAGAACACCGGAGGATCAACGTCTTACAGCGTTCTTGTGAGGGTGACTCGATATCGCCCTTATATCGACAACATTACGTCTTCGAAGGTTGTGAAATCTTGGTTGGGACATGCGGTCATATTAAAGTGCGTTGTAGATGCAAACCCTGCTGCTACCTTTACCTGGTACAAAGATGGCCGATCGATCTTGAGGGGTGTTAATTCTACACACAACAGCAGCACATTATCGATCAAACCAAATAAAAGTGACCAGTTTGGTTCGTACTTGTGTAAAGCAGTAAATATCAAAGGGATAACTCGGCATAACATTGCAGTGGAACAGCTTTACCCACCAGGGCCACCTGAAATCACTGAACGGATTCCGGATATGCTGTCCATCTCCGTGTCCTGGACTAAGCCAGTTAATGACGGCGGAAAAATGGTGTTGGATTACAAGATAGTGTTACTTGATTTTAATAAGAAAGAACAAAAATTGTTAAAAGGCATAACTGGCAATGCTTATACCCTTCAGGATTTAAGGCAAAATAGAAACTATACGATAATTATCTATGCACGAAATGATGTCGGCTACGGGAAGCCTGCAAATATCACTATTTCAACGTTGGAAGCAGCTCGTCCAGTCATTCTTTTCATTGCCACTGTGCCAAGTTTAATGTCAGTTCATGTATGGTGGAATTCAACGAACAACAACACAGGAGTAAAGATACTTGATTACAGAGTTATGCTTATAGACACCGTCACACAAGAAGAAAGAAATTTTTCAAAAATAACAGCTTTAAGCCTGTACATTAACAACCTGAAGCACAACAGAACCTACTTGATCAAGGTTCAAGCAGAGAATGATGATGGCTATGGAAGGTTTAAAATCAAAGCATTCAAGACGCTTGAAGCAGACCCGCCAGGCCCGCCTGTGATAAAAGCCTTTCCACGTGTGTTTGAATTAAAAATTACCTGGAATTCCTCTATTCAGGATATCAGTAACATCGAAATACTAGACTACAGAATCAAAGTGTGGGATGGTTCTCTTCTAGTACAAAAGCAAGATGCAATAACAGGGAGATCACTGGTCATTAAGAATTTATCAAGGAACAAGACGTACGTTATTGGAATACAAGCAAGAAACGAGGCTGGATATGGACAGATGGCAAACATCACTGCTAGGACTATTTTAGAAGGTCCACCAGATGCACCTACAATTACAAATATCACCATTCAGGAAAACTATTTTCTCATTCGGTGGACAGAGCCGTATAATGGAGAAAGTCCAATAAAATTGTACAGCGTGACTGTGTGGTTAATAAGCGCTGTTAACAATTCACACCAAACGGAAAGGCCTATTTCAAGGAACACCACAGAAACAAAACTCTCTTTAAAGTTCAAGTGGAATAAAACCTACCAAGTGGCTGTCTCCGCGTGGAACATCCACGGCCAAAGCTTTTATCGTACGACAAAAATTTTTACTACTAGAAGACCAGGATCAAGCTCTACAGTGGCGACTGCATCTCCCAAAGCTACATCTGCTACACACACTCAAGAACAATCGACAAAGTCTCATACAATTGACCAAGTCCATGACAGCACGTGAGCTGCTCATAGTTTCCCTTTTACACCTTCTCTGTTTCATGACGCAAGCATGGCTGTAAATCAGAGACCCCACTCATAACAATACAATATATTGTGAAAC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001470 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR050449 all species →	Family	Ephrin receptor tyrosine kinases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46877 all species →	EPH RECEPTOR A5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005005 all species →	Molecular Function	transmembrane-ephrin receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030425 all species →	Cellular Component	dendrite	Interproscan
GO:0048013 all species →	Biological Process	ephrin receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0023.g308.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.