Gene detail

Detailed information of amic_s0023.g35.t1 in Acropora microphthalma

Genomic Location: sc0000023_pilon:286728...292985
NR annotation: XP_015756651.1, PREDICTED: uncharacterized protein LOC107336102 isoform X2 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0023.g35.t1

AATACTCAAGCAGTTCAGTGTCACCTCTCTCTTGAGAAGGAACGAAACCAGCTCTCAACCATGCCGGCGATGCTAATTTTGCTACTGAACTATGTGATCTTTTTAACACCGACAAATATAAAGACAGTTGCAGCGGTTTCTAAATGCGAAAAAATTGACACAACTCTTCTTCCGAACTGCCAAAAAATTGGCTACAACTTTACGGCGAATTTCTCATATGTTGGACTTCAGAACTATCAAGCATTAGTGTCTACAGAAGTTGTACGTTTTAGTGATCGCTTCAGGAACTGTTCGCGGCATGCTGAAGCTTTGGTGTGCGGTCGTTACGTTCCAAAGTGTTCTGAAAACGTAGAGGGACCAGTTCACCCTTGTCGCGAGGTTTGTGAGCAGTTTGTTGACGATTGTGCAAATCTTTTAACCAACAACGGTTTATACTATCAGTATGTTGCGTACTGCAGACTCTTGTCATCCGAGACGGAGAGTTCCAAGCAATGTTTCAAACCGCTAGGATTTGTTCCTCGCGCAAACTTAACTACAGAGCGAAGGCTGCCAAGCTGCAAGAATGAAACCAAGCCGGCATGTTTGAACGACAAACTTCACAGACTGGGGAACAGAACGCGAACACGACTTCAATCCTTCCTTCATGATCTCGCTCCCGTGCTAAACAGTAACTGTTCTTTGAACTTGAAAAGATTGGCATGTTTCCTTGAAACTTCGCCATGTGCTTATGATGATGGCCGCACCCTAGAACCCTGCCCATCGCTGTGTCAAGAGGTTAGAAGTAGTTGCGAGGATGAGTTTAAAAAACACAATGTCTTTTTCCCTATGTGCATTTCCAATCAAGCTGAATCGAGCGCAGGATATGGTTTGTGTGATGTACCGCAACGACAAGTTCCGTGGCCCATAACAGAATCCAACATAATACGATGCTTCTGTAGCAACTGCACCAATAACAATGAATGCACAACAGATGGTTCATGTTTTGTGCAACATAACGTCAAAGATAAAGGAGCAGGGTTTGTCCAGACATGCATCGATAAAGGACCACATAGAGACTTCATATGCAACAGTGTGGCGGGAATTTCAACGAATGCACCCGACGCCCGTTGCTGTGAAAAGGATTTTTGCAATGGCAAACGTCAAGTTATTACCACAATGGCCACCACTGTTGAAACAACAGAGAATACTGTGGAACCAACAAATGAAGGAGACTCGAACCTGATAAACGTTCCCGGCACGACAAAGCCAGCACAAGGTGAAGGCAAGAAAGGATTAGCTAGTGGAATTCTGGCTCTTATAGCTGTTGGAATCTTAATTGTAATTTGTGTGGTTGTATCACTGGGATACTGTGTGGTAAAAAAGATCAAGGCCATCTCCAAATCTCGCAACCCAGAAAATCCAAAATACGTCAACAAATCGAACATATCAGACAATGGCAAAGTTGTCACTATTGGAGACAGTAATAAAGGATTTGAAGAAGGCAGTGAAGTGAAAACAGACACAGCTATTTATTATTAACACTCATTAGAGATATCAAGAGTTTAATTTAATATTATTTAATGCCGAATGAACTATAATCTCTGTCTCTTGAAAAGAACATTTCACTTGCCAGGATAGGAGACCTGTTGTATGAAGATTGTTTCTGAAATTTCGGCCCCAAATTCCCTGTATGAGTAGAGCATTTTACTAGTCATTTTAGATTTTCTTCTACTTGGAAAATGTCATTGCACTTCAAAACAGCTATTCTTTAAAATTCTTTCAGCAGCCCAAATTTTTAGTATTTAATTTCAGAGTACATTGCAAATGTAAATATTAAAAATATAAAAATAACAACAAAGATTGACATGTACAGTTGCATAATGTAAATGTATAAATATCACAGCTAAATTATCATCTGCAAAGAGATGTTTTGGCTGCAGATGTGAGAAAGATCTGCTCTCAGTCATGTTGGGAAATTAAAAAAAGTGTCATGAACCAAGTTCATACCTATACATTGTACAATATTTTCACATGTCAACAACCATAAGTCAATCATTTCCATACAAAAAAATGTCTTTATTTTTTTCAATAGCAGGGTGAAAGGACCTAATTACTTCAACAATACTAAGGATTATATTTAGAGAAAATGATATGAGTTTAAATGTTAAGACATGACAAATATTTAAGACCCTGCAATCATTGAATGTTGAGGCCAATAAGTGGCCTGAGAGAATTACAATAAGAATAATTACTTTGTGATATTAATTTTTGTTATTAGCCCAAAATGATTTGTTCTTTCTATGTACAGTAGTTGTTTATGATGTTCGAATGTGAACAACAATAAAATGTTGCATGTTTT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010551 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01064 all species →	Activin_recp	Activin types I and II receptor domain	Domain	Interproscan
PF01392 all species →	Fz	Fz domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR000472 all species →	Domain	Activin types I and II receptor domain	Interproscan
IPR045860 all species →	Homologous_superfamily	Snake toxin-like superfamily	Interproscan
IPR015526 all species →	Family	Frizzled/secreted frizzled-related protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11309 all species →	FRIZZLED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004675 all species →	Molecular Function	transmembrane receptor protein serine/threonine kinase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005113 all species →	Molecular Function	patched binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0007224 all species →	Biological Process	smoothened signaling pathway	Interproscan
GO:0007389 all species →	Biological Process	pattern specification process	Interproscan
GO:0007417 all species →	Biological Process	central nervous system development	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0030425 all species →	Cellular Component	dendrite	Interproscan
GO:0071679 all species →	Biological Process	commissural neuron axon guidance	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0023.g35.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.