Gene detail

Detailed information of amic_s0023.g4.t1 in Acropora microphthalma

Genomic Location: sc0000023_pilon:37979...41625
NR annotation: XP_029185845.1, uncharacterized protein LOC114953676 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0023.g4.t1

CGCTGAAAGTGGCTCAAAGTAGGCGATGCTCGGCGATGCTCAATAGTTAGCATGAGGAAAAAGACCAAAGTTAAAATTCTGTTCGGGTAGCCAAACACAACAGTGTAGTGTGTAGATATAAGATATTTGGAGAATGGTATCAGATGTGGACGGTTTGTGATGGGATCGGTCACGCAGTTCGCTTTTGGTGCGGCAGTAGGTGCTGCCCTTTTCATTGGCGTCACTACCGCTCAACGTTTATTTCTTGTCACTCCAGCCATATCCCGGACTGAACACGAAGAAAGAAACTCCCCAGAGGATGCGTCCTCACGACAAGAACAGCTACATTCTCTCCAGAGCGCTGCAACACCCGTCCGTCATGCGTCCGAGACCTCTGAGTCAGGTGGAGCCGCAGCAGAAAATGTGGTTGAGAGCGAAGCTAAGGAGGGACAGCATTTTTTGAGTCTTCTTTTTAACATAGCTGAAGATCAGGCCAGAAAAGAAGGCTATATACATCGTGGGATAACCTGTAACTCGTGTCAGACCAGTCCGATTTGTGGAATTCGCTACAAATGTGCGAACTGTGTTGACTATGATGTTTGTGAGCGTTGCGAAGTGAGAGATGATCACAACAAAACTCATTTATTTATCAAGATCCGCATTCCGATGCCTCCATTGACAAATCCAAGGGCGCCTTGCCTTAAACCACTCTATCCAGGGATAAAAGATCATCCTTGTACCATGTCATGGGACGAAATTCAGGTAATAAGAGAAAAGAGTCATTTTGACCAAGCAGAGATAGAAGCCCTTGTTGAGCAGTTTAAAACACTGGCAACAGAAAATGCAGGAATTACTCGTGAAGTGTTTGACAAGTGTCTAGGTCCTTTAGGACAAGTCAAAAACCTGGTCATGGACCAGATGTTTGAATTTTATGACCAAAACAGTGATGGTATTATTGATATCAATGAGTTTGTGATTGGTCTTTCAATACTTGTGAAAGGCAGTGAGAAGGAGAAGATCCCATATGCATTTAGAGGTTGTGATGTGGAGAAGAAAGGTTACATTTCACGAGAAAACTTGAGAAACATGTTTAAAGCTTACTTTGAGGTGAGCTTGGAGCTTGTGCGTGATGTTGTGAGATCATGTGAAGAGGAAATGATGGCTTCCTTTGATGACTCTGGGGACAAGCCAGTATCAGCATTATTTAATGCACCTATTCCTGCTGGTGAGTCTGGTCCATCCACGTCATCTTCCAAACCAGCAATGGTTCTAAATAACCCAGGAGGTTTGAATGATCAGAGAATTGATGGAAGGTGGCCAATCATGgaggcaatgtcgcaagatgcaatcgatgaaatggtcaataatgTATTTCAATGTGCGGATACAAACAAGGATGGAAAGATTTCTTTTGAAGAATTTGAAGCTTGGGCTGCCAATGATAACACAATTCTTGCTTGGTTTGAATCCCTTGGAACCATATTTTGACACTGGATGACCATTCTTTGCATTGAGGTCTTTGGAAAATTTTATAACATTGCAAAATGTACGTGACTAAACTTAACTTGACAAGGATTCTGTACAATAACCAAAGAAATTGTGTTTTGCAAAATCCAGTGTTGGTGAAAGCTCAACTTTGCCAAATAATTCTTTTGGAATTTTCAAGATCTCCTACTCACTCACTTCTGAGATATTCTCTGAAAACATACACTTGACTGCATGGTTCATTTGTAAAAACTGGATATTCATGCGCTCCACTGATGTGCGAAAAGTAGTTTTCTTTTTCAATTTCCCCAAAACTTGCATTTTTGGGCATGAAAGTCTTAACATTGCTTCATCATTCACTCAGTTGTGTTCTTTCTGTGCAAGgtaaactttgtaccttgattgaaagtaaccatctgggtgactggagtcctgagaagaactgttgttggcgactgacctttcagcaacctgtgctggagtcaagtgattctgaagatggcttcctcataggttgttggaatgtcagttaccaacaacagtccctcttaggattcaatttacccagatgatcatttccattcatggtatattattccttagttcaaaccattttcttaGGTAAATTTGTATTTAAATCTTAAATTATTTCAGAGGCTTATTTTGGATATATTTGTATGTTTAAGATGGATATTTTGTGTTCCACAAATTTAAAAGAACTGACATAAAATAGGAAAATTAATTATTTGTGTGTGATTAATTAATTATCGATTAAAAAGTCGTAAAATTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KI69	Kv channel-interacting protein 4 OS=Bos taurus OX=9913 GN=KCNIP4 PE=2 SV=1
Q6PIL6	Kv channel-interacting protein 4 OS=Homo sapiens OX=9606 GN=KCNIP4 PE=1 SV=1
Q8HYN7	Kv channel-interacting protein 4 OS=Macaca fascicularis OX=9541 GN=KCNIP4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009429 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13202 all species →	EF-hand_5	EF hand	Domain	Interproscan
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF13833 all species →	EF-hand_8	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045198 all species →	Family	Calcineurin B-like	Interproscan
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23056 all species →	CALCINEURIN B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0019722 all species →	Biological Process	calcium-mediated signaling	Interproscan
GO:0019900 all species →	Molecular Function	kinase binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0023.g4.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.