Gene detail

Detailed information of amic_s0023.g55.t1 in Acropora microphthalma

Genomic Location: sc0000023_pilon:484872...486879
NR annotation: XP_029188071.1, transcriptional adapter 3-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0023.g55.t1

AAACGCGAAGAGGGGTGGATACTAAGCATTGTTTTTCTGCTTCTCTGTGGGCTTGGTGAACAAGTTTATATGCCAAGTTTAATGCGACAAGTTTTGTCTAATCTGGGCGAAATCTAACATGGCAGACGATGGAAAAGGTGACGCAGACCCTTGTCCACTTCAATACCTCGATTTTAAAATGGTGGATCACAAGGCAATGTGTCCCTTTTATACGTCTTTGTTGACGCGCACAGCTGAACAAGGTATCGCCCCCGAGGATCTTCACCTCCTTCAAAGCGACCTTGAAACACTTCTGGCGGGCGCTAATCGCCGTATAAGACAGATTGATACTGAAAATAAACTGTTAGTTGATTGGGTGGAGAAAAAAGACAGGAAAAGCGTTCGGCAGCGTGAGTTGGAGATAATGAATGCCCTGCAATCGTCTTCATTCAAAAGAAGTCGGCCAGCCTCAGAGCAGGAAAGAGGGGCCAAAAAACAGAAATTTGACGAGTCTCACAATGCTAGCCCAGCACCGACTGGAAGGCCCAAAAGTAAACAATCGGCTTCCTCTGAGGGAGGCCAAGAGGAAGAAAATTTTCCAGCAAGCGTGAAGGCAAAAACTGATGCACCTAACAGGTTTTGGACTGCAGTTGAACCTTATTGTGCAGACATTACTTTAGAGGATCAAAAGTACCTTGAAGATTCTCTGAAAGTTCCTGATGATGATTCAGATTATTACAAAGTACCACCATTAGGAAGACATTATGCTGAAAAATGGGCACAAGAAGATCTTCTTGACGAACAAGAGGAAGGTTGCAGGATGCAGGATAAAAAACTACGTGGTACTTTGACTTCTACAAGTGAAAACATGACCAAAACAATAATTGAAGACAAATCAACACTCAAGAAAGCAGATTCTACTGGACTACCAGAAGAAAATCTCTGTCCATTTGGTCCACTTACTCAGAGATTAGTTTCTGCTCTTATAGAAGAAAACATAATTGCCCCAATTTCAGAGCAGACTTCTGGATCAGGAAGCTCTGATAGTGCCACAACTACTAGAAGTGGAAGCAACTCCCCACGTACCCCCACTAAGGCACCCCATGTCCCTAACACCAGGATGTTGGAGGCACGGATCAGAGAAGAACTGGTTTTTCAGGGATTGCTTGAGTCTGACAATCAGACAGATGAGGAAAATGATGATGAAGTTTTGAGTGAACTAAAAAGGCATCAAAATGAACTTCGTGCACTTATGGCTAAAAATAGGCAGCAGAAAATGGAGCTGTTAAAGTTAACACAGGAAGAAATTAAGAAGCAAGAGTTGAAGCATAGGGCACAAGTTGCAGATGCAGAAGTTATGGAGTGGTTCAGGAAAATGATGGCTGGTAAACAAAAGAGAAAATCTCCTTCTAAGAAAGAAAAGGAAGCTGCGTGGAAGGCATTGAGAGAAAGGGAAGCTATCCTAAGGGTGCTTGGTAACTCATTATGAGTTTGCAAATTTAAATAAAAAGTTACCTTTATACATAAGGGATATAAATGTACATGTAGATAGACTCAACCATACAGGCAGAGTTTGGTTAGAGAGCCTGCATGCGTTCTTATGTGCACCAGACTAATGAGACCTTGAGAACAGCTAAACTCAATAATATTACACCTATGCATTGTACACACATGGAttgaaacaacctgaatgttctttgacaaattaaccaatagattccatgttgctgtgcatctgttcagtaatagatcaaaaatgacgttaagttgtggtaagaacaaaaaaatagcacaagagctgataggtgagtgtcactaatgttcttaccacattttgatgtcatctgtgatctgttagtgatcagatgcacaggaacatagaatctatctgttttatatgataaagaagtaagaaagtcaacagtgacgtcatttattcatctgtccttcaatagatcatagatggcaaccaatctaaatgcaggtggaatttaAAATAAATATAAAATAATACAGATTTGGAATCCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q66JG5	Transcriptional adapter 3 OS=Xenopus tropicalis OX=8364 GN=tada3 PE=2 SV=1
Q6PGT0	Transcriptional adapter 3-A OS=Xenopus laevis OX=8355 GN=tada3-a PE=2 SV=1
Q66IZ5	Transcriptional adapter 3-B OS=Xenopus laevis OX=8355 GN=tada3-b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008659 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10198 all species →	Ada3	Histone acetyltransferases subunit 3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019340 all species →	Family	Histone acetyltransferases subunit 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13556 all species →	TRANSCRIPTIONAL ADAPTER 3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000124 all species →	Cellular Component	SAGA complex	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11315	TADA3, ADA3, NGG1; transcriptional adapter 3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.