Detailed information of amic_s0023.g61.t1 in Acropora microphthalma

Genomic Location: sc0000023_pilon:542317...563869
NR annotation: XP_015754198.1, PREDICTED: E3 ubiquitin-protein ligase RNF13-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9H6Y7E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens OX=9606 GN=RNF167 PE=1 SV=1
Q0VD51E3 ubiquitin-protein ligase RNF13 OS=Bos taurus OX=9913 GN=RNF13 PE=2 SV=1
Q5XIL0E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus OX=10116 GN=Rnf167 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005639 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13639
all species →		zf-RING_2Ring finger domainDomainInterproscan
PF02225
all species →		PAPA domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051653
all species →		FamilyE3 ubiquitin-protein ligase and sorting receptorInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR003137
all species →		DomainPA domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47168
all species →		RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was detected for amic_s0023.g61.t1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15692RNF13, RZF; E3 ubiquitin-protein ligase RNF13EC:2.3.2.27
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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