Detailed information of amic_s0023.g7.t1 in Acropora microphthalma

Genomic Location: sc0000023_pilon:62784...76335
NR annotation: XP_044180589.1, LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
G3MZY8DNA-directed RNA polymerase II subunit RPB1 OS=Bos taurus OX=9913 GN=POLR2A PE=1 SV=2
P11414DNA-directed RNA polymerase II subunit RPB1 OS=Cricetulus griseus OX=10029 GN=POLR2A PE=1 SV=2
P24928DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04990RNA_pol_Rpb1_7RNA polymerase Rpb1, domain 7DomainInterproscan
PF04983RNA_pol_Rpb1_3RNA polymerase Rpb1, domain 3DomainInterproscan
PF04992RNA_pol_Rpb1_6RNA polymerase Rpb1, domain 6DomainInterproscan
PF04998RNA_pol_Rpb1_5RNA polymerase Rpb1, domain 5DomainInterproscan
PF05000RNA_pol_Rpb1_4RNA polymerase Rpb1, domain 4DomainInterproscan
PF05001RNA_pol_Rpb1_RRNA polymerase Rpb1 C-terminal repeat RepeatInterproscan
PF04997RNA_pol_Rpb1_1RNA polymerase Rpb1, domain 1DomainInterproscan
PF00623RNA_pol_Rpb1_2RNA polymerase Rpb1, domain 2DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000684RepeatRNA polymerase II, heptapeptide repeat, eukaryoticInterproscan
IPR045867FamilyDNA-directed RNA polymerase, subunit beta-primeInterproscan
IPR042102Homologous_superfamilyRNA polymerase Rpb1, domain 3 superfamilyInterproscan
IPR038593Homologous_superfamilyRNA polymerase Rpb1, domain 7 superfamilyInterproscan
IPR044893Homologous_superfamilyRNA polymerase Rpb1, clamp domain superfamilyInterproscan
IPR007073DomainRNA polymerase Rpb1, domain 7Interproscan
IPR007066DomainRNA polymerase Rpb1, domain 3Interproscan
IPR007075DomainRNA polymerase Rpb1, domain 6Interproscan
IPR007081DomainRNA polymerase Rpb1, domain 5Interproscan
IPR007083DomainRNA polymerase Rpb1, domain 4Interproscan
IPR006592DomainRNA polymerase, N-terminalInterproscan
IPR007080DomainRNA polymerase Rpb1, domain 1Interproscan
IPR038120Homologous_superfamilyRNA polymerase Rpb1, funnel domain superfamilyInterproscan
IPR000722DomainRNA polymerase, alpha subunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19376DNA-DIRECTED RNA POLYMERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006366Biological Processtranscription by RNA polymerase IIInterproscan
GO:0001055Molecular FunctionRNA polymerase II activityInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0005665Cellular ComponentRNA polymerase II, core complexInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03006RPB1, POLR2A; DNA-directed RNA polymerase II subunit RPB1EC:2.7.7.6
DNA repair and recombination proteinsko03400deepkoala

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