Gene detail

Detailed information of amic_s0023.g75.t1 in Acropora microphthalma

Genomic Location: sc0000023_pilon:708060...711200
NR annotation: XP_015754141.1, PREDICTED: ragulator complex protein LAMTOR4 homolog [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0023.g75.t1

CGAGCTCGCGCAATTTGTGTGAAAAAAAGATACTGTATTGAAAGCACATAAAAATAAAACGAGAAACACACCATTACTACGCTTGGTTACTAAGTCTTCCGAAAACCCGTGATTCATCTATGAGAAGTCAAAATGGCCAATCCTTTACCTCATGGTTTAGATAAGATCCCAGATGTGCAAGGATACCTCGTCATTAACTCTGATGGAGCAGTTCTTGCTTCTGCAGGAGACCTTGAAAACAATGAGAATGTTGCGAGCATGATAACCAAGATGCTCCAGACTGCTGCAAAGATTCCCATATCAGGAGACAGAACACAAACTTTCAGAAGAATGTCAGTATACTTTGCAGATTTCAGTTTGATGGCAACAGTTTCCAATCAAAGAATATTTGTGGTCAAGAGGCCTTTAAAACAAGAAACAGAGTAACAAAACTCACATATCTACAAGGCGGCAAACTATTAAATAAAATTGAATTAAGCTTATTGCCATCTGGAGGTGCAAGACAGTATTGAGGATCCTAACCTACATAGATGGCCATTTTATGTATTTATTTTGTGTTGATTAATATCATTGgagagcaggtttggtgcaattgtgagagcactctcctttcaccaatgtggccaggctttgatttccagagttggtgtcatatgtgggtttaatttgtaggttctccgctctgctctgagggactcctcccctctaaccaaaaccaacatttgataggatttaattggctgtgaatcagtttggtttgtattcccctgaattagtaaagcaactatgcttggctaaatctattgagatttaacagtgattattattGGGGGCTCTGAAAAAATCACACTACAGATTGTTGTGGTGTGCCTCGGTCTGTGTTTGTCTCAAATTAGATTGAAGGGCTGTTGAGATTAAAGCTGACAAAACGCAACTGTTTGCCAATAAACCAAAACAGAAAGAAATGATTAATTAATTTTGTACCATTATGAGTATGAATTGCATGTGAAAGTGTTTCTTTTATTACATTGTGGTTTCAGTCTCTTCTGTGAAGTGATAATTTACATTACTAGGCAATTATATATATAGACAAGCATGGAAACCTCCATCTCATGATACCAAATTTCAGGTTTGCCTCACAGCAAAATTCATATTCATATGAGCAAAATCCTCCTCCCTGCCAACAGATAATTAAATTAAATACCGTCCATAGTTTTTCCTTCAAATTAATAAATACGTTGAGCTCTAGAAACATGCACAACTGAATCTAGTACTTAGTACTGATGTGTCACTTTGTGTAAATTTGCACAGGTCCAAAAGAAGTTGCAAAACTGTACTTGTATGTGTTTTCTGAAAAATTCATCTGAAGGTCGATTTGTAATAAAACTGTGCCAATTTCATAATAAACAATAAATAACAGACATAGGAACATTGCAAAAAATGATTATTAATGCTTATTGTTAATTCCTCCCTGATAGTAACTGTTGCCTGCCTGTTCTGGCTTCTTTTTCCCTGACTCAAATATTATGAGAACAAGGATCATCACGTCTTTATGAAAAGACATTCCACCCTTTGGCACAGTGTCTGATGGCAGATCAAAAAACTTAGTGTAAACTAATTGCTTCAAAGAAGTCCCTTTGTAACAGAGCTTGCAGATGTCTCAGAATCTTTTCAGAGAACTGAAAAGAGATTATTCTTACAGTGCTGACCCAAAGAACTCTACTTTCTGGGAAGAAACCCATGATCAACTCCCATGGAATGGACAGATAAACATGCTCCTTCTCTTTTGACTCCCCTGTACTACGTGACTGACCATTATTCAGTAAATAATTACTACTGAAAATTCTATAGTGAGACACATTTTCCTCAGAGAGACCTGTGATTCTCACTAGAATACAGCATCTGCATGTTACTGGACTACAACTACCAGAATCcttgaaacatggtcagcactaccattagttatgaagtagggaaacctttacttttctatggtaattagtgctgagcatgctttgagcaacttgggccaggtggttaaagcggctATCGGCATTGTTTGCAACAATACCGATATCAGCTTGTGTGCCTGGTTTCAGCAAATCAAGATTGATTCTCCTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7S6M8	Ragulator complex protein LAMTOR4 homolog OS=Nematostella vectensis OX=45351 GN=v1g232793 PE=3 SV=1
Q0P3X8	Ragulator complex protein LAMTOR4 OS=Danio rerio OX=7955 GN=lamtor4 PE=3 SV=1
A9UMU8	Ragulator complex protein LAMTOR4 OS=Xenopus tropicalis OX=8364 GN=lamtor4 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009430 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03259 all species →	Robl_LC7	Roadblock/LC7 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004942 all species →	Domain	Roadblock/LAMTOR2 domain	Interproscan
IPR034601 all species →	Family	Ragulator complex protein LAMTOR4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33967 all species →	RAGULATOR COMPLEX PROTEIN LAMTOR4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0032008 all species →	Biological Process	positive regulation of TOR signaling	Interproscan
GO:0071230 all species →	Biological Process	cellular response to amino acid stimulus	Interproscan
GO:0071986 all species →	Cellular Component	Ragulator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20399	LAMTOR4; ragulator complex protein LAMTOR4	-	mTOR signaling pathway	ko04150	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.