Detailed information of amic_s0024.g119.t2 in Acropora microphthalma

Genomic Location: sc0000024_pilon:1684560...1789332
NR annotation: XP_029186384.2, vacuolar protein sorting-associated protein 13C-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q709C8Intermembrane lipid transfer protein VPS13C OS=Homo sapiens OX=9606 GN=VPS13C PE=1 SV=1
A1Z713Intermembrane lipid transfer protein Vps13 OS=Drosophila melanogaster OX=7227 GN=Vps13 PE=1 SV=2
Q8BX70Intermembrane lipid transfer protein VPS13C OS=Mus musculus OX=10090 GN=Vps13c PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16909VPS13_DH-likeVacuolar-sorting-associated 13 protein, DH-like domainFamilyInterproscan
PF16910VPS13_mid_rptVPS13, central RBG modulesRepeatInterproscan
PF06650VPS13_VABVacuolar-sorting associated protein 13, adaptor binding domainDomainInterproscan
PF16908VPS13_ext_choreinVacuolar sorting-associated protein 13, extended-choreinRepeatInterproscan
PF12624Chorein_NVPS13-like, N-terminalDomainInterproscan
PF21679VPS13_CIntermembrane lipid transfer protein VPS13, C-terminalDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR031645DomainVacuolar protein sorting-associated protein 13, DH-like domainInterproscan
IPR031642DomainVPS13, middle RBG modulesInterproscan
IPR009543DomainVacuolar protein sorting-associated protein 13, VPS13 adaptor binding domainInterproscan
IPR031646DomainVacuolar protein sorting-associated protein 13, extended choreinInterproscan
IPR026854DomainVacuolar protein sorting-associated protein 13-like, N-terminal domainInterproscan
IPR049424DomainIntermembrane lipid transfer protein VPS13, C-terminalInterproscan
IPR026847FamilyVacuolar protein sorting-associated protein 13Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16166VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006623Biological Processprotein targeting to vacuoleInterproscan
GO:0019898Cellular Componentextrinsic component of membraneInterproscan
GO:0045053Biological Processprotein retention in Golgi apparatusInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K19525VPS13A_C; vacuolar protein sorting-associated protein 13A/C-Membrane traffickingko04131deepkoala

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