Gene detail

Detailed information of amic_s0024.g45.t2 in Acropora microphthalma

Genomic Location: sc0000024_pilon:723451...733495
NR annotation: XP_029183672.2, kinetochore protein NDC80 homolog isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0024.g45.t2

AGGCAAAGAAATCAAATTTTTATTTTTATACTTACCAAGATGAGACGGTCTACCTTAGGTACACTTAACATTGGAAACCAAAACCGACAAATCGTGCGAGAAAGGAAGACTTCGCTTGGAACGCGGCCTTCAATCGGAGGCAGACGACCTTCATTATCGGGTAGAGCTTCGCTTGCGAATCCAAGATCAAGTAGGCCATCCAGCCAGTATGGCAGAGAAAACTGTACGCAAATGAAAGACACAAGACCCCTTTCAGACCGAGGTTACCAACAAAAGATGATCAGATATCTTATGGAGTTTCTGACAGATTTCAACTATCCACATCAAATTTCAATGAGGATACTGAGCGCACCTTCAATGAAGGAGTTTTGCAACATTTTCCAGTTTCTTTATAAGTACATCAAGGCTGACACCCAGAAGACAACAGCACTGGAATCAAAACCAGCAGATGAAATCCCAAAGATCTTCAAGATGCTTGGGTATCCATTTTCCATTTCAAAAAGTAACTTGCAATCTGTTGGAAGTCCACATGCTTGGCCTATAATTCTGGGTGCATTGTGTTGGCTCATTGAGCTTATTAGGCTTGGATTAAGTGTTGGACATGATGTTGAAAGCCATGTCATGTTCCCAGAGGACAACTATGGTGCAGGGGTAGAATACCAAGATGATGGACCCCAACCTGAGGATAAGTTCTTTTTTAGTTATCTTGATAAAGGCTATGCAGCATTTATGGCAGGCAAAGAACTTGATGAACTGGGAGAATATGACAACGAGTTTGTGCAAAACATAAGGTCAAGAAATGCTGCTATGCTTGATGGAATGGAAGACTTGGTAAAGGAAAACATGGTGCTTGAAGAAGAACTGAATGCCTTGGAAAGTGATTCTTCACGCCTTCAGAAGCTGTCTGAAAGGAAAACAACATTGATTTCAGACAGGGAGAAATTTGTAAACTATGTGGGAGACTTGGGAAAGCATAAAAAGCAACTTGAGGATGTAAACAGCCAACTTATTGAGGAACTACAGGGACTGAAGATGGAAGAAGAAGCAGCTATGCAAGAGAATTCCATGCTTCAGAACACACTGAACAACCAAGAGCTCAGTGCAGCAGATGTGGAAAGGATGAAGCATGAAAAAAGAGAATTACAGAAGACTGTCGAGCAGCTGGAGAAAAATCGAGATTATTTTGATCAGCAAATCTGGGAGAAGGAAATGCAATATGCTAAAAATCATGAAGAGTCTGAGAAACACATCCGAGAGTACAATGAAATGGCCAGAAAACTAAAACTCATACCTCCAACAGCAGAAAATGCAAAAGGATTTGATTTTGAGATGCATTTTAACCCACATTCTTTAAGACCTGACCAGGGAGCTCTCACTGACTTCAAAGGAACAATCAAGCCTGCTTTGCTTCGCCTCAGACAACAAATCAGTGAGAAAAGTCGTGCAGTGAAGTCTCAAGTAGTCACAGAAGAGGAAACATGCGATCAGATAAGTGATATGGTTGCTGACAAGCAAGAAGAAGTGGCAGCCTTGGAGATGAAATTACAAACTTTAGACAAGGATTTGGAATGGAAAAAGGAGATCATGGCTAAAGAGTACCAAAAGTCAAGTGGGACAGCACAGGGTTTGGAGGAATGTGTCCAGCAAATGCGAGCTAAAGTGTTAAAATGTGAAGAGGCTGAGGAACAACAGAAGGAGGAATTAAAAGAACTTAAGCTTAGGGCTGAGGGAAATAAAGTCAAATTAGAGAGTGAAAAAGAGGAATATTCCACTTTCATACTTAAGGCTTGTCAAGTTATAAAGGAACACAAAATGCTCATACAGAATCGAATTCACGGAGTCCTTGAACAATCCAACGATGAACTTGAACAGACAAAACAACAACGGGTAGTATCATCATCATTCCTTCTTTCGAAGTATCGTCAAAAGgaagaagaagaagaagaaCACATAACActaaaataatttataaattattattagagcagttttcaaatgactgtcgaaagtaattatgtgattgcgattgctatgcatagtgattggcttaaaaaaactcgcgccagtttttcaaccaatgagaagcaaaaccaaaac

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q76I89	Kinetochore protein NDC80 homolog OS=Gallus gallus OX=9031 GN=NDC80 PE=1 SV=1
Q4R630	Kinetochore protein NDC80 homolog OS=Macaca fascicularis OX=9541 GN=NDC80 PE=2 SV=1
O14777	Kinetochore protein NDC80 homolog OS=Homo sapiens OX=9606 GN=NDC80 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003110 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03801 all species →	Ndc80_HEC	HEC/Ndc80p family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005550 all species →	Family	Kinetochore protein Ndc80	Interproscan
IPR038273 all species →	Homologous_superfamily	Ndc80 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10643 all species →	KINETOCHORE PROTEIN NDC80	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031262 all species →	Cellular Component	Ndc80 complex	Interproscan
GO:0051315 all species →	Biological Process	attachment of mitotic spindle microtubules to kinetochore	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11547	NDC80, HEC1, TID3; kinetochore protein NDC80	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.