Gene detail

Detailed information of amic_s0024.g59.t1 in Acropora microphthalma

Genomic Location: sc0000024_pilon:894830...912994
NR annotation: XP_044177823.1, activating signal cointegrator 1 complex subunit 3-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0024.g59.t1

CAGGCTACGTTGATGTAACTTTTTGTAAGCAACAAACTCTTCGAAGAACCGTTTTTGTAATGAGTGTTGTCAGCTGTGGACAAATAGCATCATACAACAATGGTACATAGTATTCCATCGATTGACATGTCTTCCACATGCATAGGCAACTGGAATGTGCGGCCGGTACGTTTAAGTTCCGACCGTCAGTTCGTCCAGTTCCCCTTGAAGTTCACATCTCCGGCTATCCCGGCAAGCACTACTGTCCGCGCATGGCAACTATGAACAAGCCCACGTTTGCTGCTATTCGTACCCATTCTCCCACAAAACCTGTCGTCGTGTTCGTGTCGTCACTACGACAGACTCGGTTGATAGCGCTGGAGTTGATTTCGTTTTTAGCCGCTGAAGACAATCCCAAACAATGGCTGCACATGCCCGAGACTGAGATCGACTCGTTAATCAAAACAGTCAAAGATAACAATTTGAAGTTGACTCTTTCGTTTGGTATCGCCCTTCATCATGCGGGTTTGCACGAGAGAGACCGAAAAGTTGCCGAAGAACTTTTTGTGAATCAAAAGATTCAGATTTCAAGTGGAACTAAGGAACTCGCGCCAAGTCTTCCCTTGGAAGTGGATCCTCATTCTTACGACAGTCCGCACACCAAGGCACATCTTCTCTTTCAAGCTCATTTCTCTCGGCTTCCGCTGCCCAGTACTGATTACCTTACAGATACGAATTCAGTGCTTGATCAAGCCATCAGAATCTTGCAAGCCATGATTGACGTATCTTCATCTGAAGGTTGGCTTGCAACATCTTTACGCTGTATGCATTTGGTGCAAATGGTGGTGCAAGGCCGGTGGTTGCATGATTGCACCCTTCTTACTCTTCCCTGTGTTGATTCTGGTATCCTGTCGCTGTTTAGACTGAAGAACCGCTCCTTGGAATGCCTCCCTGAACTGTTGGATGCTGTGAGAGGGAACAGAAAGATTTTAAATACAATGCTGGGAGATGCGCTCAGCGAAGGAGAAATCACAGAGCTCTTTAATACGTTGGCACGTTTGCCGCAAATCAGTGTGAAAATGAAGGTGCGCGGAGTTTGGGCTGAGAATGAATTGGGACAAAAGGAAACTAAAGCAATCAGTACTGCACAAACAGAGGGGCTGGTGAGGAACTGGGTTCAAGTGCATGCAGATCAGGAATATGTTATTGTAATCGAAATTGCAAAGGACAGTTTAGGATTCAAGGGCCAGCGGCGTGATACGAAAGCCCATGCGCCTCATTTTCCAAAAGTCAAAGATGCTGGTTGGTGGATAGTCCTTGGTGAGATAGACTCGGGTGAGTTGCTTGCCGTGAAGAGAGTAGGGCAACTTCGTTCGACTAGCACAGTGTCTGTATCGTTCTACACGTCTGAGGCCCTCGGTAGAAAGATCTATACGGTGTACCTCATGAATGACGCTTACTTGGGGGTGGACCAACAGTATGATGTTCATCTGGAGATAATCGACAGCGACATCTCCAGTCAAGTCAACTCAGAAGTCCATTTCTGAGGGCTGATTTAATCAGCTCAATCAATAACGTTCAGTAAAAATTTGGGATGGCCTTAGCAAGTTAAACGAACCCTTGAGATTTCAGCGTAACGGCATAAGTTGCTATATTTGTATTAAATTGAAAAGTCGAAACCAATTACAAGGAGAGACGAGTCGGTGGTTCAGCTTTGTTATCGAAGCGAAAAGAGTACCGAGTTTCAATAAGTGTATCTCAGCCAGCTTAAATTAAAACGCTGATTTCGGCTTCAAAACAAACGTTTCCAATGGCAAAGTTGTCAAAAGATACGAATTGCAGTCAAGCTGAGAGGTTTCTCCCAGCGGATTCCAGCCGTATGGCCAAAAGCGAAAACCACATTTTTCTTCAAATACAAGACAACGCAAAATGCACATAATGAATTACCTTGGCCGAGATGTAGAATTTCCCTGTTTGTCTGAATCTGTTCCAAAACAATACTTCCATAATTTATGAGCAGCGATAAAACTGCACCAAGATGCACTGATCACCATCTCGTCGCTTCGCAAAATTTTCAGTAACTTCAATTATTTAGGTCAGGTTAACACAGCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E1BNG3	Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus OX=9913 GN=ascc3 PE=3 SV=1
F1NTD6	Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus OX=9031 GN=ascc3 PE=3 SV=2
E9PZJ8	Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus OX=10090 GN=Ascc3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001413 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02889 all species →	Sec63	Sec63 Brl domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004179 all species →	Domain	Sec63 domain	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24075 all species →	SEC63 DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0043138 all species →	Molecular Function	3'-5' DNA helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0024.g59.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.