Gene detail

Detailed information of amic_s0025.g114.t1 in Acropora microphthalma

Genomic Location: sc0000025_pilon:1560356...1574057
NR annotation: XP_029180160.2, GTP-binding protein RHO1-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

amic_s0025.g114.t1

TGAAGCGTCAACGGGCACCAAAAATCATCTTTGAGGATGTTGTCGCGCAGGCGAAACACGCTACCAGTGATATTAGAACCGACTTTAGATCACGAACATTTAACATCTTTACTGGAAGAGGAGACGTACCGAAGACACTCAAGTGACGACTCTGTTTTACTTGATCAGGTTGACGGTGAAAAAAGAATGTTACTTGACTCCGAGCGGATGTGCAGTCATCCAAGCAAGCGTTACAAGCTGACAGTAGTGGGAGATGAACAATGTGGGAAAACAAGTTTGCTTAATGCACTTGTCAAGAGTGACTTTGAGGCGGAGGAATCTTGCGTATTTGACGAATGCGTTGCGGACATCATAACACAAGGCAGTCGACTAGAGCTTATGTTGTGGGAGATTTCTGGACTGGATGATTACGAAAGCATAAGAAGAGAATTGTACAGAGACTCTGACGTAATACTTGTATGCTTCGACATTGGTCAACCTTTATCGTTACAAAGCGTAATCAACAAGTGGGTCCCTGAAATAAATGACGCATGCCCAGGAATACCTTACTTGCTGATTGGCTGCAAGAATGACCTGCGCTCTGACACTGCGCTTCAATATTACCTGACAGTACCACGACAAGAAGAGAGCATCAGCAGAGGCAAGGCGCTCGATGTCGCCCATTCTACAATGGCCCGCGATTATGTCGAATGTTGCGCCAAGACGCGCTGGAATGTCAAAGAAGTTTTTAAGAGCGCTGCTGATGCCATACTTTTCAAGAACGACGACAAAGTCGACGAGATCAAATCTCAATCTGTACTTAAGAAGTTTTCTTGGTTCTCTCGGAGGTCTTCGGGTTCTGATATTGCTGACTGTAATACCATTCCTCGTTCGCCGTCCACAAATCGAAGACTGTCTTTGTTTTCAACAAGTTGATAGATCCTATCTAAATACAGTGTTTCCATGGTCCGTTAACGGACAACGAGTATCGGCTCATGGTGATGCCGTAGCGTCAAACTAACATCAGTCTCCACTTGTGAGGAATTCATGTAAGTCTGCGCCAGTTGAATAACGCTGTGCCTGGTTTCAAGTAGCGGCCACCACCTTAGGTAGTTTCTTTCATCAATCAGTGCGTTTTGACGAAACGAGACCTCTCGAAGGAattggggacctttagattcaagggcaaggacgagaaagagtatgaaattcgaccgcccgtttttagctaaaatttattactcggatgattaatcttcctatttgtcagcagcctgggtctagattgctcagttattcgtattgatgctaactgagccttgtcctgctcgaataatgccaaacctgccaccatgttggtgacgtgttttgacacacgacattttcgcaaaatgccgctggtttgtacgcgctcactgtttttctatgagaaaatctcgttctcgatcaagccctcgtcctagaatctaaaggtccctatagacgctattcataaatggctgccaattcattattcttttgtccttgtgtaaattagcctaccaagcctcattgtcaggtgctaaattgaaaagaattcttgctctagggcgatgtttggtaggctaatgtgcacaataacagaacaaaaataaaacagccgacatttatgaatagggtctatTATCAGCGCGAAGACGAAGAGATTATTAGAGGAATTCATAAGTTGAGCGGCTCTACAGTAGAACATGCTATTTGCGTGGGTATACAGATGACTTGGAGACATGTGCATCACTGAGCTTGTGGACTTCAGATTGTCGATTTCTACCTTCATGTTGGCCACAGAATAAGGAAGAAACCATGTATAAAGTGGTTGGAAGGGGGGAGGGTGGAGAGCATAGCCGGGTGGATAAGGAGGCCACGGAACATGGAAACGCACGGGAGAAGCTACGGGATCTCTTGACGCCCGGGCGAAACATGGTACAAAACGCTGCCAAATATTTATTTCTAAAAATAAAGACTTTGATCAAACCTTCAAAAATTCTACACTCGTTTCTAAGAATGTCCACTTTTTCATAACTATGTACAACATCAGACAAAATTGAGTATTTTTTTTAAAGTAGTCTTTTGACGCTTAACACCTCGCTTGGTTACACaataataataataataataa

Protein

Uniprot

Uniprot term	Description
Q9HF54	GTP-binding protein RHO1 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=RHO1 PE=3 SV=1
Q8J212	GTP-binding protein Rho1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=RHO1 PE=3 SV=1
O42825	GTP-binding protein RHO1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=RHO1 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003578	Family	Small GTPase Rho	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0019901	Molecular Function	protein kinase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04513	RHOA; Ras homolog gene family, member A	-	GTP-binding proteins	ko04031	deepkoala