Gene detail

Detailed information of amic_s0025.g114.t2 in Acropora microphthalma

Genomic Location: sc0000025_pilon:1560356...1574057
NR annotation: XP_029181805.2, GTP-binding protein RHO1-like isoform X3 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0025.g114.t2

TGAAGCGTCAACGGGCACCAAAAATCATCTTTGAGGATGTTGTCGCGCAGGCGAAACACGCTACCAGTGATATTAGAACCGACTTTAGATCACGAACATTTAACATCTTTACTGGAAGAGGAGACGTACCGAAGACACTCAAGTGACGACTCTGTTTTACTTGATCAGGGGCCAGGGAAGAACATTTAATTTAGTACTTGAAGAGCACGCGACTACAGAGTAGGTTGACGGTGAAAAAAGAATGTTACTTGACTCCGAGCGGATGTGCAGTCATCCAAGCAAGCGTTACAAGCTGACAGTAGTGGGAGATGAACAATGTGGGAAAACAAGTTTGCTTAATGCACTTGTCAAGAGTGACTTTGAGGCGGAGGAATCTTGCGTATTTGACGAATGCGTTGCGGACATCATAACACAAGGCAGTCGACTAGAGCTTATGTTGTGGGAGATTTCTGGACTGGATGATTACGAAAGCATAAGAAGAGAATTGTACAGAGACTCTGACGTAATACTTGTATGCTTCGACATTGGTCAACCTTTATCGTTACAAAGCGTAATCAACAAGTGGGTCCCTGAAATAAATGACGCATGCCCAGGAATACCTTACTTGCTGATTGGCTGCAAGAATGACCTGCGCTCTGACACTGCGCTTCAATATTACCTGACAGTACCACGACAAGAAGAGAGCATCAGCAGAGGCAAGGCGCTCGATGTCGCCCATTCTACAATGGCCCGCGATTATGTCGAATGTTGCGCCAAGACGCGCTGGAATGTCAAAGAAGTTTTTAAGAGCGCTGCTGATGCCATACTTTTCAAGAACGACGACAAAGTCGACGAGATCAAATCTCAATCTGTACTTAAGAAGTTTTCTTGGTTCTCTCGGAGGTCTTCGGGTTCTGATATTGCTGACTGTAATACCATTCCTCGTTCGCCGTCCACAAATCGAAGACTGTCTTTGTTTTCAACAAGTTGATAGATCCTATCTAAATACAGTGTTTCCATGGTCCGTTAACGGACAACGAGTATCGGCTCATGGTGATGCCGTAGCGTCAAACTAACATCAGTCTCCACTTGTGAGGAATTCATGTAAGTCTGCGCCAGTTGAATAACGCTGTGCCTGGTTTCAAGTAGCGGCCACCACCTTAGGTAGTTTCTTTCATCAATCAGTGCGTTTTGACGAAACGAGACCTCTCGAAGGAattggggacctttagattcaagggcaaggacgagaaagagtatgaaattcgaccgcccgtttttagctaaaatttattactcggatgattaatcttcctatttgtcagcagcctgggtctagattgctcagttattcgtattgatgctaactgagccttgtcctgctcgaataatgccaaacctgccaccatgttggtgacgtgttttgacacacgacattttcgcaaaatgccgctggtttgtacgcgctcactgtttttctatgagaaaatctcgttctcgatcaagccctcgtcctagaatctaaaggtccctatagacgctattcataaatggctgccaattcattattcttttgtccttgtgtaaattagcctaccaagcctcattgtcaggtgctaaattgaaaagaattcttgctctagggcgatgtttggtaggctaatgtgcacaataacagaacaaaaataaaacagccgacatttatgaatagggtctatTATCAGCGCGAAGACGAAGAGATTATTAGAGGAATTCATAAGTTGAGCGGCTCTACAGTAGAACATGCTATTTGCGTGGGTATACAGATGACTTGGAGACATGTGCATCACTGAGCTTGTGGACTTCAGATTGTCGATTTCTACCTTCATGTTGGCCACAGAATAAGGAAGAAACCATGTATAAAGTGGTTGGAAGGGGGGAGGGTGGAGAGCATAGCCGGGTGGATAAGGAGGCCACGGAACATGGAAACGCACGGGAGAAGCTACGGGATCTCTTGACGCCCGGGCGAAACATGGTACAAAACGCTGCCAAATATTTATTTCTAAAAATAAAGACTTTGATCAAACCTTCAAAAATTCTACACTCGTTTCTAAGAATGTCCACTTTTTCATAACTATGTACAACATCAGACAAAATTGAGTATTTTTTTTAAAGTAGTCTTTTGACGCTTAACACCTCGCTTGGTTACACaataataataataataataa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HF54	GTP-binding protein RHO1 OS=Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=RHO1 PE=3 SV=1
Q8J212	GTP-binding protein Rho1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=RHO1 PE=3 SV=1
O42825	GTP-binding protein RHO1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=RHO1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003892 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR003578 all species →	Family	Small GTPase Rho	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072 all species →	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0025.g114.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.