Gene detail

Detailed information of amic_s0025.g178.t1 in Acropora microphthalma

Genomic Location: sc0000025_pilon:2268169...2276917
NR annotation: XP_029198553.2, katanin p60 ATPase-containing subunit A-like 1 isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

amic_s0025.g178.t1

GCTTTATTCATCTTTTATTTGTTTGAAAGGTTTCAGGGAAGCCAAAATGAGTTTGGCTGAGATTTGTGAAAATGCCAAGATGGCTCGCGAGTATGCCCTACTTGGTAATTATGACACTTCATTGGTGTACTATCAAGGTGTCATACAGCAAATCCAGAAACACATCCAGCAACTTAAAGATGATGCTATCATGAAACAAGAGTGGCACCAGGTGCGACAATCCATTGTTAAAGAATATGACCAAGTCAAAGAAATTAATCAAACCCTGGCAAATTTCAAGAAAGATACAGTGCATTTTGGTGGACCACGGCGTCCACATGAGGAAGAGCCAACCAGAGACCCTGATGTGTGGCCACCTCCAGCGCCAGTGGAAAGAGATCACAGGCCTTCTAAACCTGCACCTCGTCCGGTGGTAAAGAAAAATGAGGATTACAATCCATCAGTGAATCGAGCACCAAACAAGCGAGTTGCAGAAAAGGTTGGGCGTAAGCCTTCTGGTGGTCCTAGCAAACCTTCACGGGATGCAAGACAGGGGGATAGAGGACGGGGCCAGCAGAAAGCAGACAAAGAAAAAGGAGCTGCAAAGAAAGAGCAAAAGCAGGATGAAGCAAAAAGCAGCGAGGGAGATGGTGATGGTGAGAAGAGATTTGATGGCAGTGGTTATGATAAAGATCTGGTCGAAGCTTTAGAAAGAGACATCCTACAAAAAAATCCTAATGTTCACTGGAATGACATTGCTGGATTGAGTGAAGCCAAGAAACTTTTAGAAGAGGCTGTTGTTTTGCCTTTGCTCATGCCTGACTATTTCACTGGCATTCGTCGTCCATGGAAGGGTGTTTGTATGGTTGGTCCTCCCGGAACGGGGAAAACAATGTTGGCCAAAGCTGTCGCTACTGAGTGTGGTACAACTTTCTTCAATGTCACCTCATCAACCTTGACATCTAAATATCGCGGTGAATCAGAGAAACTGGTCAGGTTGTTGTTTGAGATGGCAAGATTTTATGCCCCAAGTACAATTTTTATCGATGAGATCGACTCAATCTGTAGCAAGAGAGGATCTGATAGTGAGCACGAAGCAAGCAGAAGAGTGAAATCAGAATTGCTGATACAGATGGACGGTGTTGGTGGAGGTACAGCTGAAAGTGGTCCGCAGCTAGTTATGGTTTTAGCTGCAACTAACTTCCCTTGGGATTTAGATGAGGCCCTCCGTAGAAGATTGGAGAAGAGGATTTATATTCCATTACCTGAAACTGTTGGACGCTTGGAGTTGCTCAAGATTAACTTACGTGGAGTAAACATAGCTGATGATGTTGCTCTTGAGGAGATTGCCAAACAGATGGAAGGTTACAGTGGAGCTGACATTACAAATGTTTGCAGAGATGCATCCATGATGGCAATGAGACGTCGAATTCGGGGTTTAACACCAGAACAGATTAAGAATTTGCCAAAAGAGGAACTTGATTTACCTGTTAATATGGAGGACTTTGGTTTAGCTCTCAACAAAGTCGCTAAATCTGTGTCTGATGCTGATATTAAGAAATACGAAGAGTGGATGAAAGAGTTTGGTGCCACATAGAAAGTAATCACGTAATATGCGTGTATAATATATCACGTGCTGATATGTTGACAGATTTCAAATGATTACACTAGATTTGTTCCTAAAATCCTACCAGGAAGACAATACTGATTGAACACAACACAAAGTTAAATTTGCAGATAACATTTTTTGCACGTCAGATAAACTTCGTCAATAAGAGCAAGTAATGACTTTGTTAGGGATGTTTGGTAATGTCCGTGACAAAAAGAGCTCTTTCCCCTTACATACTCCACAAATCATTACCAGCTCTGTTTGTAAACTCGATTCCTTTCTTAGCTCTAAGAGACCCAAACATAAGTGATGTAAATCATTTGTATCCTGGAAAAAAAAGAAACAACAGAAAAAGTAAGACCTAGTTTTTGTTAGGGCTGTTTCTTTACAAGCACTTTGATTTTTCTCCTCGACCTCCTGACCTCTCCTCGTCGTCTTTTCGTCTTTTCTTCCATCCTCATCCTGTTCTAGACTCCTAAACCCAAATCT

Protein

Uniprot

Uniprot term	Description
B3EX35	Katanin p60 ATPase-containing subunit A-like 1 OS=Sorex araneus OX=42254 GN=KATNAL1 PE=3 SV=1
Q5RII9	Katanin p60 ATPase-containing subunit A1 OS=Danio rerio OX=7955 GN=katna1 PE=2 SV=1
Q5U3S1	Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio OX=7955 GN=katnal1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF17862	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF09336	Vps4_C	Vps4 C terminal oligomerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR050304	Family	Microtubule-severing AAA ATPase	Interproscan
IPR041569	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR015415	Domain	Spastin/Vps4, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23074	AAA DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0015630	Cellular Component	microtubule cytoskeleton	Interproscan
GO:0051013	Biological Process	microtubule severing	Interproscan
GO:0140603	Molecular Function	obsolete ATP hydrolysis activity	Interproscan