Detailed information of amic_s0025.g197.t3 in Acropora microphthalma

Genomic Location: sc0000025_pilon:2500798...2519362
NR annotation: CAH3164423.1, unnamed protein product [Porites lobata]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q96GD3Polycomb protein SCMH1 OS=Homo sapiens OX=9606 GN=SCMH1 PE=1 SV=1
Q8K214Polycomb protein SCMH1 OS=Mus musculus OX=10090 GN=Scmh1 PE=1 SV=1
Q9VHA0Polycomb protein Scm OS=Drosophila melanogaster OX=7227 GN=Scm PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002745 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02820
all species →
MBTmbt repeatDomainInterproscan
PF12140
all species →
SLEDSLED domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004092
all species →
RepeatMbt repeatInterproscan
IPR038348
all species →
Homologous_superfamilySLED domain superfamilyInterproscan
IPR021987
all species →
DomainSLED domainInterproscan
IPR050548
all species →
FamilyPolycomb group and chromatin remodeling factorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12247
all species →
POLYCOMB GROUP PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0006355
all species →
Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003682
all species →
Molecular Functionchromatin bindingInterproscan
GO:0042393
all species →
Molecular Functionhistone bindingInterproscan
GO:0045892
all species →
Biological Processnegative regulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0025.g197.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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