Detailed information of amic_s0025.g3.t1 in Acropora microphthalma

Genomic Location: sc0000025_pilon:35966...111085
NR annotation: XP_029187171.2, vacuolar protein sorting-associated protein 13D-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5THJ4Intermembrane lipid transfer protein VPS13D OS=Homo sapiens OX=9606 GN=VPS13D PE=1 SV=2
Q9VU08Intermembrane lipid transfer protein Vps13D OS=Drosophila melanogaster OX=7227 GN=Vps13D PE=1 SV=3
G0S3B8Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001911 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00627
all species →
UBAUBA/TS-N domainDomainInterproscan
PF06650
all species →
VPS13_VABVacuolar-sorting associated protein 13, adaptor binding domainDomainInterproscan
PF16910
all species →
VPS13_mid_rptVPS13, central RBG modulesRepeatInterproscan
PF12624
all species →
Chorein_NVPS13-like, N-terminalDomainInterproscan
PF16909
all species →
VPS13_DH-likeVacuolar-sorting-associated 13 protein, DH-like domainFamilyInterproscan
PF16908
all species →
VPS13_ext_choreinVacuolar sorting-associated protein 13, extended-choreinRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015940
all species →
DomainUbiquitin-associated domainInterproscan
IPR009543
all species →
DomainVacuolar protein sorting-associated protein 13, VPS13 adaptor binding domainInterproscan
IPR031642
all species →
DomainVPS13, middle RBG modulesInterproscan
IPR026847
all species →
FamilyVacuolar protein sorting-associated protein 13Interproscan
IPR041969
all species →
DomainIntermembrane lipid transfer protein VPS13D, UBA domainInterproscan
IPR026854
all species →
DomainVacuolar protein sorting-associated protein 13-like, N-terminal domainInterproscan
IPR031645
all species →
DomainVacuolar protein sorting-associated protein 13, DH-like domainInterproscan
IPR009060
all species →
Homologous_superfamilyUBA-like superfamilyInterproscan
IPR031646
all species →
DomainVacuolar protein sorting-associated protein 13, extended choreinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16166
all species →
VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006623
all species →
Biological Processprotein targeting to vacuoleInterproscan
GO:0007005
all species →
Biological Processmitochondrion organizationInterproscan
GO:0019898
all species →
Cellular Componentextrinsic component of membraneInterproscan
GO:0045053
all species →
Biological Processprotein retention in Golgi apparatusInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K19527VPS13D; vacuolar protein sorting-associated protein 13D-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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