Detailed information of amic_s0025.g40.t1 in Acropora microphthalma

Genomic Location: sc0000025_pilon:730718...736173
NR annotation: XP_029187228.2, quinone oxidoreductase PIG3-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q53FA7Quinone oxidoreductase PIG3 OS=Homo sapiens OX=9606 GN=TP53I3 PE=1 SV=2
A7RK30Quinone oxidoreductase-like protein 2 homolog OS=Nematostella vectensis OX=45351 GN=v1g238856 PE=3 SV=1
Q86ZD9Squalestatin tetraketide synthase OS=Phoma sp. (strain C2932) OX=86977 GN=pks1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003292 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08240
all species →
ADH_NAlcohol dehydrogenase GroES-like domainDomainInterproscan
PF00107
all species →
ADH_zinc_NZinc-binding dehydrogenaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013154
all species →
DomainAlcohol dehydrogenase-like, N-terminalInterproscan
IPR011032
all species →
Homologous_superfamilyGroES-like superfamilyInterproscan
IPR014189
all species →
FamilyQuinone oxidoreductase PIG3Interproscan
IPR020843
all species →
DomainPolyketide synthase, enoylreductase domainInterproscan
IPR013149
all species →
DomainAlcohol dehydrogenase-like, C-terminalInterproscan
IPR036291
all species →
Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48106
all species →
QUINONE OXIDOREDUCTASE PIG3-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003960
all species →
Molecular FunctionNADPH:quinone reductase activityInterproscan
GO:0016651
all species →
Molecular Functionoxidoreductase activity, acting on NAD(P)HInterproscan
GO:0048038
all species →
Molecular Functionquinone bindingInterproscan
GO:0070402
all species →
Molecular FunctionNADPH bindingInterproscan
GO:0016491
all species →
Molecular Functionoxidoreductase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10133TP53I3; tumor protein p53-inducible protein 3EC:1.-.-.-
p53 signaling pathwayko04115deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora microphthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora microphthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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