Gene detail

Detailed information of amic_s0026.g17.t1 in Acropora microphthalma

Genomic Location: sc0000026_pilon:264097...283305
NR annotation: XP_022777847.1, F-box-like/WD repeat-containing protein TBL1X, partial [Stylophora pistillata]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0026.g17.t1

CTAACGCATTTTTTTTGCATAATCGCCTAAAAGTGTCTTCACGTAAAAGTTTGTTAAAACGAAAAATAATGAAAATACAATCTCGTGACGTAACGCAAGTTCGAATCATGGCTGCCGTGCAGTCACGTGATATTTCGCGCTTGATCAACATGGCGGACTAGCAGTCATTGAGCACAGCAAACAATCATTATACATTTCGAGAGTTTTATTCCTTTGCACTCCTGTAGCGATCTTATTTTCAAAGTCACGTTATAAGCATGCTCGTCTTAAGGATCAATTGATTGCTCTATTTTTGGATCTTTTCATTGTCTGACCGCAGTTTTTTATGTTCGAGTTCGGGATCAATGACTGAATTAACAACGTGAAAAAATAGCTCAGACCTTTGTGAAGATTATGTGTTATTTATGATGTCTATGAGCAGTGATGAGGTGAACTTTTTAGTTTACAGATATCTACAAGAATCAGGATTTCAGCATTCTGCATTCACATTTGGAGTGGAAAGTCACATAGACCAATCCAATATAAATGGGTCTGTTGTGCCACCAGGAGCTTTGGTGTCGATTATTCAGAAAGGTGTGCAATATGTTGAGGCAGAGGTGGCACTGAACGAGGATGGAAGCTTACTGGATGATTCTAGTGAGTTGGCTCTCATCGATGCCGTTCTGCCAGACATTGTTGCAACAAAACATTCATTGTTACAAAATAGTAGGCCCATTAAACCAGATTTTGGAATTAAACAAGAATCAAATCTAGATGATGGACATTTCAGCCACGAGCTTAACTACAAAAGTCACGGAGAAGTTATGGACTTGGATAGTGCGGCAAATGATGTTGGAAATCATAGAGCGACAATATTAACTGGACATGAATCTGAGGTTTTTGTTTGTTCATGGAATCCATCGCAAGATTTACTAGCATCTGGGTCTGGGGACAGCACTGCACGGCTATGGCCAATTAGCGAATCAGGAATTGGTTCACCAATTGTATTGCAGCATCACTTTAAAGAGTTAGAGAACCACAAAAATATGCCCAGGGATGTTACATCATTAGAGTGGAATAATGATGGAACACTTCTAGCTACTGCGTTTTATGATGGACAAGCGAGGATATGGAACCCAGAAGGGGAGCTGGTTAGATTACTTAGTGACCACAAAGGGCCAATATTTTCCATTAAATGGAACAAGAAGGGAAATTACCTCCTTAGTGCAGGTGTAGACAAGACTGCCATTGTTTGGGACTCAAATAACTGGGAAGTCAAACAGCAATTTGGCTTCCACCAAGCCCCTACATTGGACGTGGACTGGCAAAACAACAATAGCTTTGCGTCATGTTCAACTGACAAAATAATACATATCTGTAAAATAGGAGTTGACAAGCCAATCAAATCTTTTCAAGGGCATACTAGCGAAGTAAATGCAATCAAGTGGGATCCTTCAGGGTCGTTATTAGCTTCTTGTTCGGATGATTTGTCATCTAAGGTTTGGAGTACGAAACAAGATTCTTGGGTCTTCGATCTTCAGGGTCACAAAAAAGAAATTTATACAATAGCATGGAGTCCAACTGGACCTACTACGGCGAGTCCCAATGCTCCTCTTTTGTTAGCTAGTGCGTCATATGATACGTCGGTCAAGTTGTGGGAACTTGAGCGTGGTAACTGCATCATGTCACTAACCAAACACCAAGAACTCGTGTGTTCAGTCACTTTCAGCCCTGATGGCAAATACCTGGCTTCTGGTTCGTATGATAGAGCGTTGAATGTCTGGTCAACACAGACTGGAACGTTAGTTCACAGTTTCCATGGCAATGGGGCGATATTTGAAGTGCAGTGGAGCCCGCGAGGGGACAAGTTAGCGGCTTGTTTTTCGGATAACACGCTGTGCGTCTTAGATGTCCGGAATCTTTGATCCTTTCTCGTCCTCCGGTTTTTTTCAACTTGAACGTCTTTCAAAGACGCTATGGCTCAACAGGACACATGACGACATACCAAAGTGTTCGTTACTTCCGACTCCAAAAAAAGGCGACCGGTTATGGTCCAAATTCGAGCTTGCTTTCTTTTGTGAGATTGCTGTGGACGAAGATATATTCATTAGATACCTAGAGTAATTATTTGTATCATATCTTGTTGCTGTTTTCTTGGGCTTATCAAATGACTTGTTCACCAAATTAATTTATTTGCAAAGAACACTCCTTTGTTTTCCTAAAGGACAGCAGTTTGCCTCGCGTTTCGGGAAACCTTCGTAATCATTTTTTTACCGTTTCATTCAACAATGACTGCAATAAGATCTTGAAGTCAGCGTTATTTTGTAGTCTAGAGTAAAACAGGCTGACTAGATATGTAAACAATTGTATAAATGGCTGCATCGAAGACTCGAAATCGCCCGTTGGTACTGGCTGAAGAAATTGAGCGCAAAATTCCGACCTCTGGCGCTGGCTGACGTCTTTGTGCTTCGAACATATAGAAAGCCGTTCCGTATGAAAGAAAGAGCGAACAACCTAATAATAGATTTTTGCGTCTTAATGAAAAACTATTTTCCCCTTTTTTTTTTGTTCATTCACAACATTTTTATCCGAACGCGTACATTCTTTCAGCTCTAACTGGAAGAAAGTAGATTAAATTGACCCTGAAACAAAGCGAAGCCGATTTTCAAATTCTGCCAAAAGATTTGAAGATTACGATGTTGATAGAGCCAAGAACAAGGACAAAACCCGTCTAAGTTGCGCCAAACGGCCTATTCGCGCAAACACATAACGCCTAAGTTAACAAATTTATCAACTCAGACGATCATTTTCGAAACTTTTCGTTGCCTATGATCAATTTATTTAGATAAGTTTGGACTTGATTCTCAAAGTTGCATTTTCAAATTTATCTTGAAATCTAGCTTAAAGGTGTGCGGAGTGTCAATAATTAAGAAAGCGTGCCGCACGAGCGTATGTATTTCGCGATTTCACGTGCAGAACGCGATTTTGTACATTTCTTACTTCATTTGAGTATACTGACAGCGTTAGTATACACTGCATTTTGTAGTCTTTCGTCCTTCGTATTTATTTTTTTCCAGTATCAACTAGGTAGTTGCCTACGTATAACATCCTGGGATAAAATTATTTCGAACCAGAATTGTCCATAGCCTCAACTTTTTAGATTGACAGTGTTATTAAATTTTAAAGCATTCGGATATCAGCCTAGTAAAGAGACTTGTTTTCAAATTGAGGTTGTTACCTTTTTGTGAATCTTTTTGGTTTTTTATGTTTTTTTTTCCTTTGTTGTCTGTTTGATTTTTATACATGTATGTAAATAGATATTCCTAGACCTTTACCAGTTCAATTTTTTTCCTCCATCGCGTTTTCGGTCATCGGCGTGCGAAtagggagcttaagcgtgaacgacagcaacggcaatgacgtcgccagaaaacaatgttctgattggctgaatgaggaaaactaatcgtgctgcaggtgaggcacgcactttagtacaat

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60907	F-box-like/WD repeat-containing protein TBL1X OS=Homo sapiens OX=9606 GN=TBL1X PE=1 SV=3
Q4R8H1	F-box-like/WD repeat-containing protein TBL1X OS=Macaca fascicularis OX=9541 GN=TBL1X PE=2 SV=1
Q9QXE7	F-box-like/WD repeat-containing protein TBL1X OS=Mus musculus OX=10090 GN=Tbl1x PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006285 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045183 all species →	Family	F-box-like/WD repeat-containing protein Ebi-like	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22846 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000118 all species →	Cellular Component	histone deacetylase complex	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0026.g17.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.