Detailed information of amic_s0026.g33.t1 in Acropora microphthalma

Genomic Location: sc0000026_pilon:655796...684889
NR annotation: XP_044165687.1, LOW QUALITY PROTEIN: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6RUU0Pentraxin-4 OS=Mus musculus OX=10090 GN=Ptx4 PE=1 SV=2
P82279Protein crumbs homolog 1 OS=Homo sapiens OX=9606 GN=CRB1 PE=1 SV=2
Q96A99Pentraxin-4 OS=Homo sapiens OX=9606 GN=PTX4 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000900 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07699
all species →		Ephrin_rec_likeTyrosine-protein kinase ephrin type A/B receptor-like DomainInterproscan
PF12661
all species →		hEGFHuman growth factor-like EGFDomainInterproscan
PF07645
all species →		EGF_CACalcium-binding EGF domainDomainInterproscan
PF00354
all species →		PentaxinPentaxin familyDomainInterproscan
PF02494
all species →		HYRHYR domainDomainInterproscan
PF00008
all species →		EGFEGF-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR009030
all species →		Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR000436
all species →		DomainSushi/SCR/CCP domainInterproscan
IPR003410
all species →		DomainHYR domainInterproscan
IPR011641
all species →		DomainTyrosine-protein kinase ephrin type A/B receptor-likeInterproscan
IPR018097
all species →		Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR000152
all species →		PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR013032
all species →		Conserved_siteEGF-like, conserved siteInterproscan
IPR049883
all species →		DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR001881
all species →		DomainEGF-like calcium-binding domainInterproscan
IPR001759
all species →		FamilyPentraxin-relatedInterproscan
IPR035976
all species →		Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR051355
all species →		FamilyNotch and Slit guidance proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45836
all species →		SLIT HOMOLOGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0007411
all species →		Biological Processaxon guidanceInterproscan
GO:0008201
all species →		Molecular Functionheparin bindingInterproscan
GO:0048495
all species →		Molecular FunctionRoundabout bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22023MUC6_19; mucin-6/19-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP