Gene detail

Detailed information of amic_s0027.g16.t1 in Acropora microphthalma

Genomic Location: sc0000027_pilon:266876...278625
NR annotation: XP_015757003.1, PREDICTED: ETS translocation variant 1-like isoform X1 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0027.g16.t1

AAATACAACTATGATGTTGTGTGTATGTGACAAAGCCAACCAAATAATACAAACTCTATAGTAGGCAAAGTTGCCAGTTTTTTTATGACTAAACTGGTGAAATTAATTCATGACAACGAATCGTTCAGGTTTTCAGTCATTCGCCGTTTGTCAGTATTTTATTAGTTTTAAGTGGCCAAATACAAGTCCGGTTGACTTGATTGAAAACACACGTCTTGCTTGGCCGGGACGGTGTTTATAAATTTACACACCAAGTCTAGAATGTACCAGTTGGATTCAACATTTGACCAAGAGGTTCCTCATATGTATCCACAGCTTTCTTCACGAAACACTTATCTCGAACGAAAGTCCTGCAGTCCCACCGAGAGAATTCGAGGCCAGGGTGACTCTCTCTCTACAGACACGCAAGAACTGTTTCAAGATCTTTGCCAAATGCAAGAACACTGGATGATTGAAGCGCGACCCTACCAAACAAATACCACAGATGAACAGTTTGTCCCAGAAATCGAAACAAGCTCGACCTCGCTGAATTCAAAGACAGAAGGTAGCTATGCCATACAGATTAAACCAGAGCCGAGACAGCGCGCGTGTCAAGGTGCTGAACATCATAGGCCAACAACACTAAAACAGACAAACAAGATGGATAAGGCAACAGATAACTCTACCTATATGAGAATGATGACTGCAGAGACCCATGCTTCAAGCAGTTCACCTCTAGTTTACACCTGCCCCACACAGCCTTCAACGTTTCACTGTATGAAAGGATATAGGCAAATCACCGCGGCATTTGACAACACGCCTTACGAATCTTCACCTTCGTCAAATTATACCACGATCAAGCAAGAACCTCTCGACTATGGTACGACGTGCGACAATCCATACGAACAAGAACGTTTACAGAGCCTCGCTTCGTATCACCATCCAGGAGCTCACCAACAGAGTGAATGCTACAGCCTGCAATCACCTTCCAGTGAAGCTGCAGTCTATGATCCAAATGTGCACTCGTTTTATGACGAGCCTTTGCCATATCCAGAAAGATACCACAAATATACAGACTTCAACGATCACAAACCAACATATAGAGACGCTCCCGAATTCAAAGTACCAAATGGAGTTACCTATCCGGAACCTAGAGCCTTTCAGAGAAGGGGATCGTTACAACTCTGGCAATTCCTGGTCGCTCTTTTAGACGAGCCTGAATGTTCCTCGTTTATAGCTTGGACAGGACGTGGAATGGAATTCAAACTCATCGACCCCGAAGAGGTTGCAAGACGATGGGGAATCCAAAAGAATCGCCCAGCCATGAACTATGATAAATTAAGTCGCTCTCTGCGCTACTACTATGAAAAGGGAATCATGCAAAAAGTGGCAGGAGAACGCTATGTATATAAATTCGTCTGCAGCCCTGAGGCGTTATTCAGTATGGCTTTCCCCGACTCACAAAAACCCTACATCAAACCAGAATGCAGGGAACCAAAGCCTGTGAGCCCACACGCAAGTCAGCAGCTTCTTCCCATGCCTAAAGATCCTTATGCCAAGGCACCATTCCCACAGCAGCATTATGTCACACCAACAGCAAACTGTTACCAAGCCGAGTGGGACCTCGACACCACATGTGTTTACTAACAACAGAAGGATTTCACTGACAGAAATGTTAATTAAAGGAGCAAGGTAGACTCCTTGTTTCAACAATAACAAAACTTCTTAATGACAGCCTGTAATCCAATTGAGCTCTACTGGAAAGAGTGTCTCAGTTTCCTTACTTCCTCTATCGGTTACAGGTATGCGAAACACTGCATTCAATGACATTTCCATTTAAGTTGTAATGTCATATAATCAGCATAAAATCTTTTTGTGTTAATGACTGGCATGCTCATTATTTAAATTACTGTTACGGTTTTTTCTGAACAGAACAAAACCTTTTTGGTAAAAAGGGCTTTAAAATTGCTTTCAAAGTGTCTAATAATGAAAGATTTGCATTCATTCACCCAAAGCTCTGGGCAACCAAATTTACCTAGTTTGGTAAAAGGATATCATGATGCATGGTGGGTAAGTAAATGCGATAAATTTTGCAGCATTTACACATGAAAAAGGTCAGATTTCAATACACATGTAGAGCAAACTCGCCACTAGATTTTTCCTTGTACTTCATTACACAAGGAATAATTTTGTCTTGGTTTTATATCCAGGCAGTTTGTGACTGACAAAAAGTTTTAATGCCGTGTTTAATCACATTTGACGACCTTTAAGGAAACAAAACCACAACTAAGTATGTGGGCTCGCTCGTAAGCGTTTTGGCGGGAATGCGTAACACCGCTCGCGTTTGAGCTTCTTGCGATGATTGGCTAATCTTATTGTTTGTCTGTTGTGATTTCCAAAATAAATGATTTTATTTTGACTTCACAATATTTGATATTATACAGCTGCAAAAATGGAACATGCCGAGGGACCATTAGAAAAGGTGCTAACTTCATGGGAAGAGAATTAAGCTTTCACACTGTTTTTGCTTCTATTAGATTTTGTTCTTCAACAATACGGATCCAATTTTCATTGAAAGCACACGAGTACACTTAGATTTAAATGTTGCTCAACTTGTTCTTAGGTCGATTGATTTTTCTAATGATTCCCCTCGTTTCCTCCTTTCCTAAATGGTCTCCCTAGCTTAAATATTAGAATTTCGACCAGAAGGGAAAGCATCTCTTGATTTCCCTAATAGTCCTCATTAAATCGAAGAAATTTTCCGCTGCAGTAATTTCCCGCATTTTTGTCCTACATAAACTTTCTTTTTCgtgtgtgtgtgtgtgtgtgtTTTTAACGTCTTAAATAAAAAAGAAATGCAAATTTATTTGTGACATTGAACGCATTTCCCTTCCTCGCTCTATCGTGGACTAAACTGTGGCCATTTCTCCTATTTTTCAAAGCCTCGAATTCAAAGAATTTTTCAGGTAAAAATTGTACACATGCAGATAATTTTTGTAGCGGAGAGTTACTTCAAACGATAGGAACTTTAACAACCTTTAGATGTGATGAAACATACATTGGAATAGGCTTCGCCTGAATGCGTGAGGTCAAACTGAGGCGATTGGTAAATATTTTCTATATTAGGTAGCCTTTGTAAAGTTTGGATGATCGATCGACGATCAAACAAGTATTAAAGCGAACGCAACTGTATTGTTCGTGTTGTCTATAAAAGTAATCATTTATTGCTATTATATTAGTCACTTATTGTTTATAACATGTAAAATACATTTTGACCAAATATCTATAAATTTAAATTTGTAATATTTGAAGATGCCTTGAAAGCTGGAATAAAAGAGGAGATATAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P41164	ETS translocation variant 1 OS=Mus musculus OX=10090 GN=Etv1 PE=1 SV=1
P50549	ETS translocation variant 1 OS=Homo sapiens OX=9606 GN=ETV1 PE=1 SV=2
Q2KIC2	ETS translocation variant 1 OS=Bos taurus OX=9913 GN=ETV1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003128 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04621 all species →	ETS_PEA3_N	PEA3 subfamily ETS-domain transcription factor N terminal domain	Family	Interproscan
PF00178 all species →	Ets	Ets-domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000418 all species →	Domain	Ets domain	Interproscan
IPR006715 all species →	Domain	PEA3-type ETS-domain transcription factor, N-terminal	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR046328 all species →	Family	ETS family	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11849 all species →	ETS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09431	ETV1; ets translocation variant 1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.