Genomic Location: sc0000027_pilon:474452...476185
NR annotation: ROL46693.1, Pogo transposable element with KRAB domain [Anabarilius grahami]
Species abbreviation AMICR · all data for this species · gene families
| CDS |
| amic_s0027.g24.t1 |
| Transcript |
| amic_s0027.g24.t1 |
| Protein |
| amic_s0027.g24.t1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000155 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03221 all species → | HTH_Tnp_Tc5 | Tc5 transposase DNA-binding domain | Domain | Interproscan |
| PF03184 all species → | DDE_1 | DDE superfamily endonuclease | Family | Interproscan |
| PF09607 all species → | BrkDBD | Brinker DNA-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009057 all species → | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| IPR006600 all species → | Domain | HTH CenpB-type DNA-binding domain | Interproscan |
| IPR010921 all species → | Homologous_superfamily | Trp repressor/replication initiator | Interproscan |
| IPR004875 all species → | Domain | DDE superfamily endonuclease domain | Interproscan |
| IPR018586 all species → | Domain | Brinker DNA-binding domain | Interproscan |
| IPR050863 all species → | Family | Centromere and Transposable Element-Derived Protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19303 all species → | TRANSPOSON | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0043565 all species → | Molecular Function | sequence-specific DNA binding | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
amic_s0027.g24.t1.
