Gene detail

Detailed information of amic_s0028.g31.t1 in Acropora microphthalma

Genomic Location: sc0000028_pilon:848954...860027
NR annotation: XP_029179659.2, cytochrome P450 27C1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0028.g31.t1

CTCTAGAGAGGGGGCAGTGGATCGATTGCCTGATAGCCTCCTTATGGTGAACCTTCAAGGGACTTCTCAACGCCGCTTTCTTCATTCAGAGGATGCCTTCTGCGAAAGTAAGCTGGGTCGGTGTTGGAAGAAATCCTTTTAGAATAACTCAGAATTTCAAAAGTCTAGGTTCTTTATGTCTATGGCGCTCAAAATCAACACAAGCAGCTTCCCAAGAGGCGAACTTTGATTTGGGTGATTCCACAGAGATCGAGGATTATGGCGAAGTTCGACCTTTCGACGACATTCCGGGACCGAAGCGTAGCCTGCAAAACCTGATCGCCTTTTATCGCCGAAGCGAAGGCCTTACCAAAAGTTACAAGAATTCGGAAGCTCTTTTCAAGGAATACGGTCCGATTTTCAAAAGCAATCTTACGGAAGATATGGTAATGGTCCATATTCTCGACCCAGATGATTACAAGAGAGTATTTCGAGCTGAAGGGAAGTATCCTCGAAGACCTCTCCTGGATTTCTGGGTTGAGCATCGCAAAAGGAGGAATTATTTTCCTGGATTAGTGCTGTTACAGGGAGAAGAGTGGCAGAGGGTCAGAAAGAGCATTGCTCCTAAGATGATGCGCTTGAAAACAGTGCAAGAAAACATTGATAATTTCCATGCTGTTACTGAAGATGCTATTATGAGATTTACAAAACTTAAAGAAGCTGGTAGGGGAAATGGTCACATTCCAGACTTGGAAGAGGAATTGAAGAAATTTTCAATGGAAAGTATAGGGACAGTTGCCTTCAATACACGACTGGGACTATACCAAGACCCACCTCCAGAGAAGGCACTGAAATTCATCGAAGCAGTTGATATGTTCTTCGTTCAAACTCAGAAAATGATGACAAGTCTGCCAAGTGCAATGATGCGACGGTACATTGAGACGCCAGCTCTGAAGAAATTCTTCAAAGCTGCAGACGATATTGTGGACATTGGTGAATATTTTGTCAGCAATAAAATGAAGGAGCTTAAAGAAATGTCAGAGAAAGGTATCGAGCTCTCAGATGAAGTGGTTCCCGTGTTGACATATTTACTCACCACACAAAACCTGAGTCTGGAGGAAATCAATGGTTTGGCTATTGATGTTATTGGTGGTGGTGTTGATACAACAGCAACCACATTGTTATGGATGATGTATCATCTCGGTAGTTATCCGGATGTACAAGACCAGCTTTACCAGGAGTTTGAGAGAGTTGTTGGGAAAGAGGGAAGTATCACATCAAATAATATTGGCAAGTTATCCTTCCTCAAGGCTTGTCTAAAAGAATCGATGAGGCTTTCCTGTGTTTTTCCAGGAAATGGACGTGTCTTGGATCAAGACATAGTTTTATCCGGTTATAGAGTTCCAGCTAAGAGTTTCATCGCTATGGAATTGTATTGCACTGCTCATTGTGAAAAGTACTTCAAAGACGCTATGGAGTTTAAGCCGGAGCGCTGGTTGAGGGAAAACAGAGATGAATATCACGCGTTTGCTAATTTACCGTTTGGATACGGTGTGCGCATGTGCCTTGGTCGGCGAGTCGCAGAGTTGGAAATCTACCTGTTCTTGTGCAAGCTACTTCAGAGGTTTCGCATTGAGTATGTTGGCGAGAAACTGGAGCCTATTCAGAAGCTTCTATCGGTGCCTGAGAAACCAGTGAAGGTCAAGTTGGTGGATCGGTTTTGATTCCAGCGTAACATTTGGAATGACATGCAACATATTGACCGAGATGTCACATAAGGCCATAATCTAATTTTAGCTCCGTTTTGTTTTTTTCTGGTAGATCTACATTGAATGTTCACAGTCAGATTTCGGTTATCACGTAACGCTTTCATATGACTCGCATTTTTATCTTCATTTTGAAGTTTAGTTATCACGCAACCCGGTTTGAAAGCGTGAAGGGTATTACGTGACAATTTTTTTTTTCGGTTGTCAGCAGCGATTAACATGACTCAACGGCATCATGAAGTCTTACTTAAGAAGTCATCCTGATGTTATTTATAAATTACTCGTTTGTAATATCCAAAGACTTAAAACTTTCTTAGAGTGAacagaaagctattatggtatttaaatccttaaatggtcttacacctgagtatctaagcgagctgtttgttagccgttctgacgtaactgattatctattgagggactcggtaaacaaacttgctgttccatt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4G0S4	Cytochrome P450 27C1 OS=Homo sapiens OX=9606 GN=CYP27C1 PE=1 SV=3
P0DOX0	Cytochrome P450 27C1 OS=Aquarana catesbeiana OX=8400 GN=cyp27c1 PE=1 SV=1
A8WGA0	Cytochrome P450 27C1 OS=Danio rerio OX=7955 GN=cyp27c1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000329 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00067 all species →	p450	Cytochrome P450	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001128 all species →	Family	Cytochrome P450	Interproscan
IPR036396 all species →	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR017972 all species →	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR050479 all species →	Family	Cytochrome P450, families 11 and 27	Interproscan
IPR002401 all species →	Family	Cytochrome P450, E-class, group I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24279 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006700 all species →	Biological Process	C21-steroid hormone biosynthetic process	Interproscan
GO:0006704 all species →	Biological Process	glucocorticoid biosynthetic process	Interproscan
GO:0008203 all species →	Biological Process	cholesterol metabolic process	Interproscan
GO:0034650 all species →	Biological Process	cortisol metabolic process	Interproscan
GO:0071375 all species →	Biological Process	cellular response to peptide hormone stimulus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0028.g31.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.