Gene detail

Detailed information of amic_s0029.g31.t1 in Acropora microphthalma

Genomic Location: sc0000029_pilon:543140...549262
NR annotation: XP_029193993.1, inosine-5'-monophosphate dehydrogenase 2-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0029.g31.t1

CGCATTTCATATTCCTGTTCACGTACCCTCTCAAACTTGGCGCCTGCTGAACTAAAGAAGAACTTACACATTCCAGCAAGGATTAAAGGGTGCTAAACTACTGATTGATTTCAGTTTCCAGTCTACAACACGGGCATCGAGTCGCATACACGAGTGCAGAGACAGTTTTCGTTTTGCGAAGTGGCTGTCTTGGACCAAACTGTTGGCAATAACTTCCTGAACTTTTGGCATCGTAAGAGGAAATTCTAAAACAAGTCGATGATCACCATTGTTGCTATCATCGGCAAGTCGTTGTAAATTGTCTTGTGACTACACAAGTTTCGACATCGTATGATAACAGACATAACACGAGACTTGGAAACCAACATGGCGGAATATCTAATTAGTGGTCACACAAGCTATGTCCCAGAAGACGGCTTAAGCGCGAATCAATTGTTTGGAAACGGTGCGGGTCTCACTTACGACGACTTTCTTATTTTACCGGGATATATTGACTTCACCGCTGATTCTGTTGACCTTAGTTCGGCTCTGACTCGCAAGATTTCCCTCAAAACCCCGCTTGTAAGTTCACCAATGGATACCGTGACAGAATCCAATATGGCCATTGCCATGGCACTTCATGGAGGCATTGGAATAATTCACCATAATTGCAGCCTGGAATTTCAGGCTAATGAAGTTCGCAAAGTAAAGAAGTTTAAACAAGGATTTATCAGTGAACCCAAGGTGCTAACCCCTGCTCACACTGTCCGTGATGTCATGGAAATTAAAAAGAAGTATGGATTTTCTGGGATACCGCTGACTGATAACGGATATCTCGGTGGTGTTTTGGTTGGAATCGTGACGTCACGTGACATTGATTTTTTGACCGAAGATCAGTATTCGTTGACGCTGGACAAATTTATGACACCGCGGGAGCACCTGATTGTTGCGAAGGCAGGCTGCACGCTGAGAGAGGTCAATCAGATCTTACAGAGCAGCAAAAAGGCAAAGCTACCTATTGTAAACGAAAATGGAGAGTTGGTCTCCCTCATTGCGCACACAGACCTCAAGAAAAACCGCGAATATCCACTCGCTTCCAAAGACAGCAAAAAGCAGTTATTGGTGGGTGCAGCAGTGGGCACGCGCGAAGAAGACAAACATCGAATTGAGGCTCTGGTTCATGCTGGTGTCGATGTGGTTGTGTTAGACTCTTCCCAGGGGAACTCAGTCTTCCAGATCAATCTCGTCAAGTACATTAAAGAAAAGTATCCTGATTTGCAGGTCATTGCTGGAAATGTTGTAACCGCTTCACAGACAAAGAATCTCATAGATGCTGGCGCAGATGCTATCCGTGTGGGAATGGGAAGTGGCTCAATTTGCATCACGCAAGAGGTTATGGCTGTGGGTCGCCCCCAAGCCACCTCTGTCTTCCGGGTCGCTGAATATGCGCGTCGATTTGGGGTTCCTGTGGTAGCTGATGGAGGAATCAGGTCCGTGGGTCATATTATCAAAGCCTTAGCACTTGGCGCCTCAACTGTTATGATGGGTTCGCTTTTAGCAGGAACTACAGAGACCCCTGGAGAGTACTTTTTCTCAGATGGAGCGCGCTTGAAGAAGTATAGAGGAATGGGCTCGTTAGATGCTTTGGGACATGGCGCAAGTCAAAGTCGTTACTTGGTGGAAAGCAACAGAATCAAAGTTGCTCAAGGTGTCTCTGGTACTGTACCCGATAAAGGAAGCATACATCGTTTTGTGCCTTACTTATATGCTGGTATACAACATGGCTGCCAAGACATGGGAACAAAGAGTCTATCAGCAACACGGTCTATGATGTACAGCGGTCAACTCAAGTTCGAGAAGAGGTCTGCGTCGGCGCAAAGGGAAGGGGGAGTGCATGGGCTCCACTCGTACGAGAAAAGGTTGTACTGACAAAGGGAAACACTCTCAAATTAATGCAGAGATTACAGCAGTATGAGAGCTTTATTAAGTAGAAAGCTCGAACAAGGTCCAAAGCTTTTTTATCATAGTGACAGTCAATAAAATCTCAGGAAGGGAAAGCAATAATTCTAAACAAAAGTGAACGATTTTTAGTTATGCGTTGCATGCAAGTCCTGCTTGCTTTCTCGTTTTGTCGTGGCGTGAAAAAAAAGGACTGTCTGGAATAATTGAAATGAATGTGAACCGACTCACAGACTATAAGTTTGGGTGAAAACGAAACTGGGCGTGCGCACGAGTGTCTAAAAGAAAACGCTGGTTGATGTAACTTTCCTGTTTGTTTCTTGATATTCGCTGGATGCAAAATCTTCTTGATGAGGTTATATTTTCCGAGAAGAAGCGAACTCCACAAATATGTCAATGTAGAATATTTTGTACTTCAGCTGTTAATTTTTTGTTTTTCATTCCAATTTGTTGTTAATAAAGTCGTCATCAATCAGCAATCCTTGACAATTGGTGGTTCTTATTCGTCAAATTTGATACTATCATCAACACCGAATTCTTTATCGTATTTATAATTTGTTATTTCAAAACGAAAATATTCCTTGAACAGCTCGCTACCATTCACAAGCTCTTTTCAGTTGTTGTTGTTTCTTTGGGTTAACCAAACCTTGGACTTCTAATTTCTGTAACATGAACGGCGTTTTGTGTTAATGATAAACATTCGCTATTTACATCAGAAGCAAGTAAAAGCTGTTGATGCATTCTATCACGCCCAATAAAACAGCTTATCGATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E9PU28	Inosine-5'-monophosphate dehydrogenase 2 OS=Rattus norvegicus OX=10116 GN=Impdh2 PE=1 SV=1
P24547	Inosine-5'-monophosphate dehydrogenase 2 OS=Mus musculus OX=10090 GN=Impdh2 PE=1 SV=2
F7CYY5	Inosine-5'-monophosphate dehydrogenase 2 OS=Xenopus tropicalis OX=8364 GN=impdh2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001934 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00571 all species →	CBS	CBS domain	Domain	Interproscan
PF00478 all species →	IMPDH	IMP dehydrogenase / GMP reductase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR000644 all species →	Domain	CBS domain	Interproscan
IPR005990 all species →	Family	Inosine-5'-monophosphate dehydrogenase	Interproscan
IPR015875 all species →	Conserved_site	IMP dehydrogenase / GMP reductase, conserved site	Interproscan
IPR001093 all species →	Domain	IMP dehydrogenase/GMP reductase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11911 all species →	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003938 all species →	Molecular Function	IMP dehydrogenase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006164 all species →	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0006183 all species →	Biological Process	GTP biosynthetic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00088	IMPDH, guaB; IMP dehydrogenase	EC:1.1.1.205	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.