Detailed information of amic_s0029.g34.t1 in Acropora microphthalma

Genomic Location: sc0000029_pilon:617510...640625
NR annotation: XP_029194019.2, 77 kDa echinoderm microtubule-associated protein-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O00423Echinoderm microtubule-associated protein-like 1 OS=Homo sapiens OX=9606 GN=EML1 PE=1 SV=3
Q05BC3Echinoderm microtubule-associated protein-like 1 OS=Mus musculus OX=10090 GN=Eml1 PE=1 SV=1
Q4V8C3Echinoderm microtubule-associated protein-like 1 OS=Rattus norvegicus OX=10116 GN=Eml1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001441 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03451
all species →		HELPHELP motifRepeatInterproscan
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR005108
all species →		Conserved_siteHELP motifInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR050630
all species →		FamilyWD repeat Echinoderm Microtubule-associated Protein-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13720
all species →		WD-40 REPEAT PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000226
all species →		Biological Processmicrotubule cytoskeleton organizationInterproscan
GO:0008017
all species →		Molecular Functionmicrotubule bindingInterproscan
GO:0072686
all species →		Cellular Componentmitotic spindleInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0029.g34.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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