Gene detail

Detailed information of amic_s0029.g48.t1 in Acropora microphthalma

Genomic Location: sc0000029_pilon:816624...822639
NR annotation: XP_029194081.2, caspase-3-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0029.g48.t1

AAAAATACCATTTCTTTCGGAACACAAGAGATTTTGTAGAACGCCGTGGAAAGGACTTGTCAGTGCCATGTGCTCTCTTCTCGCTGAAGGACTGAGAAGAAACCGAAAGGCAATTCTGAGAGATTTAGATCCTTCAAAGTCCTGGAATTATCTCTATCAAGAGGGAATTTTTGATCTGGATGATATCGAAGAAATTAAGGCGGAGAGAACGAGGAAAAAGAAAGCCGAAGCATTGCTAGAGAAAGTGGAACATTCAGGTCATGATGGTATTGCTCTCTTCGCTGAAACGTTACGGGAAAGTCAAAGCCATTTATTCGATCTACTTCAAAGCTTTATAAACGACACTGGGCCTCACGGAGGCCAACTGCAAGCAGGCCAGCCTACCATTGCTCAAGTCACACACCAGGTCTCTGACTTGCATATATATAGGGAACCTGTTCCATGTGTTCCAAAAGCTTTGAGCCCAGTTGAGCATGTACACGAAGGAATTGAGCGTGCCTTTGAAAAAATCAGCTCTGGAGATCTCAGCGGAAGTTTGGAAACAAATCAAGAAAGAGGCGAAAATTACACCCCCGCTGAAGAACGTTTGGTCATTGCCCGGATTGATTTTTCTAAACTTCCTCCGCACATTCACCCATCTTCCGAGGATGTCTACCCGATGACTGCAACACCAAGAGGACTAGCATTGATCATAAACAATGAGTCGTTTGTTCGTGGTAGTGAGCAAACCGAAAAAGAGTTTGAAAAAGAGAAGTTAGAAGTGCGTCAAGGATCAGAAAAAGACACAATCTCCCTTCAAAGGCTCTTTGAAGCTCTTGATTTCAAAGTCAGGGTCAATAGGAACGTTACAGAGAAGCAGTTGTTGAAAGTCTTAGATGATGTTTCCAAGGATGATCACAGTGATTACCACTGCTTTGTGCTTTGCCTTATGAGTCATGGAAAGGAAGGACAGTTCTATTGTGCAGATGGAAAAACAGTTTGCCTCAAAGAGATTTCCAACTTTTTCAGCAATCGAAATTGTGAAACTCTAAAAGGAAAGCCAAAACTGTTTTTTATTCAGGCATGTCGAGGCTATGTAAAGGACAGGGGTGTTGTGGAAGATTCACCGAGTGAACAAGGTCCACAGCAGGCTTCAGGTGAAAACGATGAAGGTCCAGTTTGGAAGTTTTCCTTTGAAAGAGATATTATTCCTAATCAAGCAGATATGCTGATGGCATATTCAACGGTCAGTGGTTATGCTTCGTTCAGAAACCCACATTACGGGAGCCGATTTGTCCGATGTCTTGTGGAAGTATTCCAAGAAAAAGCAAGCCATGAAGATGTTCTCAGCATGCTTACGAATGTGAACGATAAACTCAGTAAAATGGGTGAAATAGATAGTAAGCAAGTGGGACAACCCACTTCAACACTGAGGAAAAAGGTTTATTTTTGGCCGGGGCTTTGAACTCACCATCTGTACGTTATTTGTAAATGTTGCTTTCAAAGTACACGATATCGCGAAATATCGCGATATTTCAAAGTACACGATATCGCGTCAGGCCGTTGTGCTAAGTGGCCCGTCAGCTTTAGAAACTTGACCGTGTAAAGTCTATTCTGTTAAACGGTTTCCTTAGGTGCCATTTTTGACTTTCATGCAATGAGTCGGAAAAAGCGTGTTTGGAATGTATTTAGATGTGATAGTGACAGTAGCGTTTGCGCAACTAATTATTGGCTGGTTCTCGTTTGTAACCATCTGCAGCATACCAAAATGAATTGTCAgttgtgcgtgttgttgatgttgttttttgtttgttttgttgctgGAATTTTGTATATATGTAAGTAATGCAACTGAATTTACTACAGCTAGTATAAAGCATTGtgttattagtataggtaatcacatgatttcgagtgcaatttggaataaatatgcacgagtaaatttttcaaagactaacaaaattgcacgaggccgtagggcgagtgcaatttggggtctttgaaaaatttacaggtgcttatttattccaaactgcactcgaaatcatgtgattacctataaaaaatacacatgaaaaaatttcgagatggttaagcagaagaaacgcacgcgtatcacgcaatcagggaagaattacgctatcaattgcgccatccagggcgtgcgcttgatttgaaagcaaaagatttgattggccatctgtgagtttctttgatcattgaccaatcagaatgcttggtttgttacctctttttgcactgagttagcccttttctgcactattttaaaaaaactgcactgctcttaaccaatcagaatggagaaattttttcatgtgtattattagctaATTAGGGAAACCAGTCTTGGTGGCAATTATGCATATATTGGGAGATTATAGTGTTATTAGGCTGAATTTGTTAATCGAGGTGAACGCTGCAACAGTAATAAACATGAGTGGTGAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97864	Caspase-7 OS=Mus musculus OX=10090 GN=Casp7 PE=1 SV=2
P55214	Caspase-7 OS=Mesocricetus auratus OX=10036 GN=CASP7 PE=1 SV=1
F1NV61	Caspase-7 OS=Gallus gallus OX=9031 GN=CASP7 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000405 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00619 all species →	CARD	Caspase recruitment domain	Domain	Interproscan
PF00656 all species →	Peptidase_C14	Caspase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029030 all species →	Homologous_superfamily	Caspase-like domain superfamily	Interproscan
IPR001309 all species →	Domain	Peptidase C14, p20 domain	Interproscan
IPR001315 all species →	Domain	CARD domain	Interproscan
IPR002138 all species →	Domain	Peptidase C14, caspase non-catalytic subunit p10	Interproscan
IPR016129 all species →	Active_site	Peptidase family C14A, His active site	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR011600 all species →	Domain	Peptidase C14, caspase domain	Interproscan
IPR015917 all species →	Domain	Peptidase C14A, caspase catalytic domain	Interproscan
IPR033139 all species →	Active_site	Peptidase family C14A, cysteine active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47901 all species →	CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02186	CASP2; caspase 2	EC:3.4.22.55	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.