Gene detail

Detailed information of amic_s0029.g71.t1 in Acropora microphthalma

Genomic Location: sc0000029_pilon:1315678...1328906
NR annotation: XP_044166792.1, protein NLRC3-like isoform X3 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0029.g71.t1

atggctgacttggttgttggagttggacccaagttgacagaagcctttcgcaagtaccttcgctggtgtaaaaaagatcaagatgtttttgagttcactcctggtgtttttgctgattttgcctgtgttgaacaagttcttgttgaaagaaaacaccgcactgtttttgtatttggtcgaggggatgatgaagattttgagttaaaggggtttgatatagcagcaagatctgttgctgcattgcacgatacagagctggtttttgtgggagcacctgatggaaaagagcaagagattgcaaaacgattgcttgattcaggaattactaaaggacatcttactgtgaggggtttcaaggatcgagaagctctgaagcgagaattctgtgaggcagatcttgtgctgatgccgtcaagaactgaagggtttggcttgacaggcctggaagctctgtcagcagggcttcctgtaattgtcagcaagaactcagggtttggagaagccctggacagtgtaccatttggttcttcatttgttatagatcctgaagattccagtgcatggacagaagccataaaaggtatctggaacaaagacagacagaagcgacttgatgagactaagattctgcgtgactcctatgcaaagagatacagttggtcagaacagtgcaaaaatcttcttgagaagatgttCAGCCTACTTGAGAATAAACAAGATTCTTCTGGCAGGCTTCAGGTCTCATTCCAGGAAGGTGCGGAGAGAAGAGGCGCAGCCATTGAAGACAGAACAGGTTCTCTTGGCAAGGATCAGGATATTCAGGATAGAATAAAGAGGAAAACAAAGAAATGCAGCGATCAGGACAAAGCAGGTTCTTCTGTCAAGGATCAGATTTTACTTCAGGAAGGAGTGAAGAGTGAAACAAGGAAATGCAGAGATCCGGAGAAAGCAGGAGAtccaagccacgtcataaagtggatacaacaaatttactcaaagcgtgaaggagtcattttgccagttccttggtgtgatagcttcagcttacagctcgagaacattttcaccagactaaggatagttgcaaaagaaaagacacgcggaaaaacaacaaaagaagtgacgagcatgacaagtatctttacaccacacgaagattgccaacaaccactggttgtgttgattgaaggcgagcctggcattggaaaaaccagctactgccagaagctagcgtatgattgggcaactaggcaaggttgcgaatgcgatgagtcttttccaagagttgaagtgcttctgctcctcagatgtcgtgaaattgaatctagctgtatatggaaagcaattgaagatcaaattttacccgagggcattcaacctgaggtaagagatacgtttattcagttcctccaagaaaatccttccaaagtgctgttggtgctcgatgggttggatgaggcagacccagtaacgctgaaactcgtccttaaactgattcaaagagagttgcttcctggctgttgcattgttcttacatctcgccatgaagcggggagtaacataaggccgtacaccgacactctgctggagattgtgggattcatgacaactgatgcggattgtttcataagaaggtactttcaccaatcagacaatcagcacttggcagcgagactcattgcaaaactgaagtcagataatttgtatgaattaacaagaaaccctctaaatactctccttctctgtgttgtctttgaggatcttgacggggttctgccaaacagcacaacagagctttacgtagagatggtcctctttgttttgagacgttatgaaaacaagaacggcttttcaagtactgttaaagaccttcttttagtttacaagaaggaactgatgatccttggcagaatggcgctagactctctgcgtaaaggagagctgtattttgaggaccatcaaggcgatttcaagcaaagcttattacctaaatttggctttgtgtccattcaggctggaggtggcaagagagcaccttgtccccgttacgcattttttcacaaaagttttcaagaattcttttccgcctttttccttgccttttctattattgacggtacaatggactgcaagtcattggctaatgaagaatacagaagggaactaagagaagtgttcagattcatggcgggaatcgtagccatgcattcggaggaaattgctgagtcaattgttgaaagctttgtatcagttgttaatttgtcaaaccccagatacagtgactatgagacgcccctgagatcggctttactctttatagacgaatgcaagcttttttcagaaaccatgttcacaaaattagctcattcatttggcaagaatctttatcgcgtggagttgGatttgtcgagtaactccattggtgctgagggaactagttccctttctgaggccttaagagtaaacacctctcttacttctttggatttgtctgaaaactccattggtgatgagggagctagttccctttctgaggccttaagagtaaacacctctcttacttctttggatttgTCTGAAAACTCCATTGGTGATGAGGGAGCTAGTTCCCTTTCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCTTTGAATTTGTCTGAAAACTCCATTGGTGATGAGGGAGCTAGTTCCCTTTCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCTTTGAATTTGCGTTATAACTTCATTGGTGATGAGGGAGATAGTTCCCTTTCTGAGGCCTTACTTTCTTAG

Transcript

amic_s0029.g71.t1

ccagagaaactgggaatgcacaaatgctatgagaatccaatctcaaagggaggactgaagcacaagatgaggtagagctatgccagatggctgacttggttgttggagttggacccaagttgacagaagcctttcgcaagtaccttcgctggtgtaaaaaagatcaagatgtttttgagttcactcctggtgtttttgctgattttgcctgtgttgaacaagttcttgttgaaagaaaacaccgcactgtttttgtatttggtcgaggggatgatgaagattttgagttaaaggggtttgatatagcagcaagatctgttgctgcattgcacgatacagagctggtttttgtgggagcacctgatggaaaagagcaagagattgcaaaacgattgcttgattcaggaattactaaaggacatcttactgtgaggggtttcaaggatcgagaagctctgaagcgagaattctgtgaggcagatcttgtgctgatgccgtcaagaactgaagggtttggcttgacaggcctggaagctctgtcagcagggcttcctgtaattgtcagcaagaactcagggtttggagaagccctggacagtgtaccatttggttcttcatttgttatagatcctgaagattccagtgcatggacagaagccataaaaggtatctggaacaaagacagacagaagcgacttgatgagactaagattctgcgtgactcctatgcaaagagatacagttggtcagaacagtgcaaaaatcttcttgagaagatgttCAGCCTACTTGAGAATAAACAAGATTCTTCTGGCAGGCTTCAGGTCTCATTCCAGGAAGGTGCGGAGAGAAGAGGCGCAGCCATTGAAGACAGAACAGGTTCTCTTGGCAAGGATCAGGATATTCAGGATAGAATAAAGAGGAAAACAAAGAAATGCAGCGATCAGGACAAAGCAGGTTCTTCTGTCAAGGATCAGATTTTACTTCAGGAAGGAGTGAAGAGTGAAACAAGGAAATGCAGAGATCCGGAGAAAGCAGGAGAtccaagccacgtcataaagtggatacaacaaatttactcaaagcgtgaaggagtcattttgccagttccttggtgtgatagcttcagcttacagctcgagaacattttcaccagactaaggatagttgcaaaagaaaagacacgcggaaaaacaacaaaagaagtgacgagcatgacaagtatctttacaccacacgaagattgccaacaaccactggttgtgttgattgaaggcgagcctggcattggaaaaaccagctactgccagaagctagcgtatgattgggcaactaggcaaggttgcgaatgcgatgagtcttttccaagagttgaagtgcttctgctcctcagatgtcgtgaaattgaatctagctgtatatggaaagcaattgaagatcaaattttacccgagggcattcaacctgaggtaagagatacgtttattcagttcctccaagaaaatccttccaaagtgctgttggtgctcgatgggttggatgaggcagacccagtaacgctgaaactcgtccttaaactgattcaaagagagttgcttcctggctgttgcattgttcttacatctcgccatgaagcggggagtaacataaggccgtacaccgacactctgctggagattgtgggattcatgacaactgatgcggattgtttcataagaaggtactttcaccaatcagacaatcagcacttggcagcgagactcattgcaaaactgaagtcagataatttgtatgaattaacaagaaaccctctaaatactctccttctctgtgttgtctttgaggatcttgacggggttctgccaaacagcacaacagagctttacgtagagatggtcctctttgttttgagacgttatgaaaacaagaacggcttttcaagtactgttaaagaccttcttttagtttacaagaaggaactgatgatccttggcagaatggcgctagactctctgcgtaaaggagagctgtattttgaggaccatcaaggcgatttcaagcaaagcttattacctaaatttggctttgtgtccattcaggctggaggtggcaagagagcaccttgtccccgttacgcattttttcacaaaagttttcaagaattcttttccgcctttttccttgccttttctattattgacggtacaatggactgcaagtcattggctaatgaagaatacagaagggaactaagagaagtgttcagattcatggcgggaatcgtagccatgcattcggaggaaattgctgagtcaattgttgaaagctttgtatcagttgttaatttgtcaaaccccagatacagtgactatgagacgcccctgagatcggctttactctttatagacgaatgcaagcttttttcagaaaccatgttcacaaaattagctcattcatttggcaagaatctttatcgcgtggagttgGatttgtcgagtaactccattggtgctgagggaactagttccctttctgaggccttaagagtaaacacctctcttacttctttggatttgtctgaaaactccattggtgatgagggagctagttccctttctgaggccttaagagtaaacacctctcttacttctttggatttgTCTGAAAACTCCATTGGTGATGAGGGAGCTAGTTCCCTTTCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCTTTGAATTTGTCTGAAAACTCCATTGGTGATGAGGGAGCTAGTTCCCTTTCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCTTTGAATTTGCGTTATAACTTCATTGGTGATGAGGGAGATAGTTCCCTTTCTGAGGCCTTACTTTCTTAGATTTGTCGTATCTTTTTCTCCTGAATGTCAAGGTCAAGGTTTCTGTTTAGGGGCCTCCGTATGTTGCTCATGAATGAGATGAATTTCAGTTAACATGTGAATTTGCATTCGGACATGAGTGTAGTGAAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q59002	Uncharacterized glycosyltransferase MJ1607 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1607 PE=3 SV=1
A1R8N8	D-inositol 3-phosphate glycosyltransferase OS=Paenarthrobacter aurescens (strain TC1) OX=290340 GN=mshA PE=3 SV=1
A0JZ09	D-inositol 3-phosphate glycosyltransferase OS=Arthrobacter sp. (strain FB24) OX=290399 GN=mshA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000025 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05729 all species →	NACHT	NACHT domain	Domain	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF20706 all species →	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46312 all species →	NACHT DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0029.g71.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.