Detailed information of amic_s0030.g1.t1 in Acropora microphthalma

Genomic Location: sc0000030_pilon:869...45105
NR annotation: XP_015749060.1, PREDICTED: collagen alpha-1(IV) chain-like [Acropora digitifera]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q7SIB3Collagen alpha-2(IV) chain (Fragment) OS=Bos taurus OX=9913 GN=COL4A2 PE=1 SV=1
Q7SIB2Collagen alpha-1(IV) chain OS=Bos taurus OX=9913 GN=COL4A1 PE=1 SV=2
P02463Collagen alpha-1(IV) chain OS=Mus musculus OX=10090 GN=Col4a1 PE=1 SV=4

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF01413C4C-terminal tandem repeated domain in type 4 procollagenDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036954Homologous_superfamilyCollagen IV, non-collagenous domain superfamilyInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR001442DomainCollagen IV, non-collagenousInterproscan
IPR016187Homologous_superfamilyC-type lectin foldInterproscan
IPR050149FamilyCollagen superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005581Cellular Componentcollagen trimerInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0030020Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06237COL4A; collagen type IV alpha-Glycosaminoglycan binding proteinsko00536deepkoala

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