Gene detail

Detailed information of amic_s0030.g110.t1 in Acropora microphthalma

Genomic Location: sc0000030_pilon:1600435...1616509
NR annotation: XP_029183444.2, hemicentin-2-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0030.g110.t1

ATGTGCCGTATGATTTCTTTCCTGCTCGCCATCATGGCATTATTTTGTGGCCATCAGACGGTGGCAGCTGTGACCGTAGACCCGACGTTATCGCAAACTCCATCTGGCAGAGAAATAACCATTACATGTAAAATGAGTGGAGAAACGTTTCTTGGTTGGTTTAAGCCAGATAAGACTCAGGTTCCCCAGTCTTCATCTGCAACAGTACGTGTGATAAAGGTGGACAACAACACATTCAGACTAAAATTTACACATGTGAAGGTGGAGGAAGGTGGTGAATATGAGTGCCGAAGCGGCTCTGGCACTAAAGGAACATTTACCTTGGAGGTTCTCTTTGACACATCAAAGGTGCAGCACACACAACATATTAAAATTGGAAGAGAAGGCACCATTACTTTAGGCGTCAGAGGTTACCCAAAACCAACAATAACGTGGAAGAAGGAAAAAACTACCTTAAATACAGCCAGAGATCCCCGCTACACTCTACTCAATGATGGCTCCCTGAAAATAAAAAATGTCAAAATTGCTGACCAAGGCAATTACACCGTCAACATTCAACAAGGAGCTGGTAGCAAATTGGTTGAAATTGAGGTGTATGCTGTGGAACATCCAAAGATTGTGGCTTTCCCAGACTCTAAGAAGTACCTCACTAAGGGTTTCTCTGCAGTGTTCATATGCAAAGCAACTGGCAGGCCACCACCAAAATATGAATGGCTCAACCCAAAAGGCACCAAGATAACATCATTTGGGCCCTTCCAAATCAGCGGTGGTAACTTAACTATCAAGGAAGTCACCACAGATATGAATGGAACCTACACATGCAGAGCATATAATGTCATTGAAAAAACAGGAGTGCAGATTGGAGAAGCCAAAGCCAAGGTTGCAATTGTTGCTATTCACGTCCCTCCTACGATCACATTAACTATTGGTAATGGTCTCAGGCCTCTAGAGAAAGGTGAAAAGGCTACATTGACATGCAAAGCCGAAGGATCTCCCATACCAACTGTAAAGTGGATAAAGAATAGGCAAAGAGACCCTCGTCAAACAATTTCAAAGCGGGGTGAAAGTATTATTGCAATAGAAAAGGTTCAACTTGTGGATGGAGGAAAGTACATTTGTCAGGCATGGAACAGTGCTGTGGATAATAATGGCCAAGTTATTGTGGCCACCGAGGCCCACACTCTTGATATCATATGCCGTCCATTTATCAACGTGCAGGCCTCTCCAAGCATAATTTACTCTTACATTGGAAACACTGACCCCACTTATATCAGCTGTACATTTGGTGGTTCTCCTGTGCCTTGGGTTGTTATGACGTACAACAAGAAGCTCCAATCAAATGCATCAAGTACAGCCAATGTGAGCATTATCACAGATTCCAAAAAGAAATTTGGGACTTTTCATTGTCAAGCCAAGAATAGTTATGGGATCAAAAACCAGACCATCCAACTTAAAGAAGTGGAATCTCCAGGACTAGTTCGTGAATTTGCACATGAAGCTAAATGTGATAGTGTAACACTTACTTGGAAGAAACCTTCAAAAGACGGAGGAATGCCAATCACAAAGTTTGTCCTCGAATATCCAGGTGTTATGCGAAATATTGATGCCTCAGAGACTTCGTACACTGTCACAGAGCTTGATCGAAATACAAAGTACAGTTTTGACATCCGAGCCACCAATAAGGGAGCCTGGGGTCCAAAAACAACTACAACAGTGACAACAAAAAAGTATTGTGAACCCGGACGCCCCATTATTTACGAGCCAAAACACAGGTATCTTGAGGAAACAAGTTTTACTCTCAAGTGGCGCCGACCACAGGACGATGGAGGAGATAAAAACATCGATTACCTTGGCAGATACCGCGACCAGACGGAGAGTAAACCGGGGCCTTGGAAGGAATTTGTAACAAATAAACAGGAATACAGAATCAAAAATCTAGGCAAAGACAAGACATACAAGGTTGAGGTGATGGCGAGAAATAAAGGTGGAAATAGCAGCCCTGATGAGAGATTTTACTCTACAACGAAAATTACAGTCCTCGCCAGTTCGCAGTCTCGATTGGTCGCTAGTGTGCTAGTAACATTTATGGTAGGAGTCCTTCATCTTCTCTGA

Transcript

amic_s0030.g110.t1

GATACACAAAGCTGTGGGAACTGTCGTTGCAAGATACGCAAGATCGCGTCTAGTAGCAACGGTCAGTCGTATTCCTGTGAGATCGGAAGCTTTAGTTTTATTTTTCACTGGTTGACGAAAAACACGCAAGGCTATGAGAGAAGAACTCCAAATGTGCCGTATGATTTCTTTCCTGCTCGCCATCATGGCATTATTTTGTGGCCATCAGACGGTGGCAGCTGTGACCGTAGACCCGACGTTATCGCAAACTCCATCTGGCAGAGAAATAACCATTACATGTAAAATGAGTGGAGAAACGTTTCTTGGTTGGTTTAAGCCAGATAAGACTCAGGTTCCCCAGTCTTCATCTGCAACAGTACGTGTGATAAAGGTGGACAACAACACATTCAGACTAAAATTTACACATGTGAAGGTGGAGGAAGGTGGTGAATATGAGTGCCGAAGCGGCTCTGGCACTAAAGGAACATTTACCTTGGAGGTTCTCTTTGACACATCAAAGGTGCAGCACACACAACATATTAAAATTGGAAGAGAAGGCACCATTACTTTAGGCGTCAGAGGTTACCCAAAACCAACAATAACGTGGAAGAAGGAAAAAACTACCTTAAATACAGCCAGAGATCCCCGCTACACTCTACTCAATGATGGCTCCCTGAAAATAAAAAATGTCAAAATTGCTGACCAAGGCAATTACACCGTCAACATTCAACAAGGAGCTGGTAGCAAATTGGTTGAAATTGAGGTGTATGCTGTGGAACATCCAAAGATTGTGGCTTTCCCAGACTCTAAGAAGTACCTCACTAAGGGTTTCTCTGCAGTGTTCATATGCAAAGCAACTGGCAGGCCACCACCAAAATATGAATGGCTCAACCCAAAAGGCACCAAGATAACATCATTTGGGCCCTTCCAAATCAGCGGTGGTAACTTAACTATCAAGGAAGTCACCACAGATATGAATGGAACCTACACATGCAGAGCATATAATGTCATTGAAAAAACAGGAGTGCAGATTGGAGAAGCCAAAGCCAAGGTTGCAATTGTTGCTATTCACGTCCCTCCTACGATCACATTAACTATTGGTAATGGTCTCAGGCCTCTAGAGAAAGGTGAAAAGGCTACATTGACATGCAAAGCCGAAGGATCTCCCATACCAACTGTAAAGTGGATAAAGAATAGGCAAAGAGACCCTCGTCAAACAATTTCAAAGCGGGGTGAAAGTATTATTGCAATAGAAAAGGTTCAACTTGTGGATGGAGGAAAGTACATTTGTCAGGCATGGAACAGTGCTGTGGATAATAATGGCCAAGTTATTGTGGCCACCGAGGCCCACACTCTTGATATCATATGCCGTCCATTTATCAACGTGCAGGCCTCTCCAAGCATAATTTACTCTTACATTGGAAACACTGACCCCACTTATATCAGCTGTACATTTGGTGGTTCTCCTGTGCCTTGGGTTGTTATGACGTACAACAAGAAGCTCCAATCAAATGCATCAAGTACAGCCAATGTGAGCATTATCACAGATTCCAAAAAGAAATTTGGGACTTTTCATTGTCAAGCCAAGAATAGTTATGGGATCAAAAACCAGACCATCCAACTTAAAGAAGTGGAATCTCCAGGACTAGTTCGTGAATTTGCACATGAAGCTAAATGTGATAGTGTAACACTTACTTGGAAGAAACCTTCAAAAGACGGAGGAATGCCAATCACAAAGTTTGTCCTCGAATATCCAGGTGTTATGCGAAATATTGATGCCTCAGAGACTTCGTACACTGTCACAGAGCTTGATCGAAATACAAAGTACAGTTTTGACATCCGAGCCACCAATAAGGGAGCCTGGGGTCCAAAAACAACTACAACAGTGACAACAAAAAAGTATTGTGAACCCGGACGCCCCATTATTTACGAGCCAAAACACAGGTATCTTGAGGAAACAAGTTTTACTCTCAAGTGGCGCCGACCACAGGACGATGGAGGAGATAAAAACATCGATTACCTTGGCAGATACCGCGACCAGACGGAGAGTAAACCGGGGCCTTGGAAGGAATTTGTAACAAATAAACAGGAATACAGAATCAAAAATCTAGGCAAAGACAAGACATACAAGGTTGAGGTGATGGCGAGAAATAAAGGTGGAAATAGCAGCCCTGATGAGAGATTTTACTCTACAACGAAAATTACAGTCCTCGCCAGTTCGCAGTCTCGATTGGTCGCTAGTGTGCTAGTAACATTTATGGTAGGAGTCCTTCATCTTCTCTGACCGACAACACTATTAAAAAACCCAACAGCGCGGAGCTTCATTTAACACTTTCATCACGAGGATTTCCTGAAAAGTAGTTTTAGTATCCGTAAAACACATGTAAAGAGTTCAATATGCATCTTTCGTATCATTTGTTGCGTGGTTAATCGTCGAGAAACTAGGCATCATTTGTCGCAATGTGTTCATGCCTTATTTTAAACCAAATAGTTTTGCCTTTAGGCAATTTTATACTTTTAGCCATTCCCCTTTGATAGGTGGTACTTAACTTTCTGCTAATTCTTGTAGAGACTGTAAGAAGATAGACCACCAATACTGTTACCTGTTTGTTATGATAATGCGTGGGAGAGGTGTTGGGTGTTAAAAAACCTGATTTGTTTTCGAGTACAAAAAGGACTGAGCATTAAGGGAATTCCATTCTATGGTAGTAGAGGTCTGTATCAAGCAACAATAGTCTATTTTCGAAATCCTCAAGATTAAAACCCGGACGACAGTTGttcaatggattaagaccaccaaaacttattgggttgtccgctgaagaaggattcatccaatagaacgcaagtgctatcgtctctttgaacaactggggccagacctTAGGGAGGACTGTACGAAAGCGTCACGTCACGGTCCGTTTTGTCTGTTTGTCACGCAATATACTTAATTTCCTTTGAACAACTGGGGCCAGGCCTTGGGGAACAACTGGGGCCAGGCCTTAGGGAGGACTGTACGAGAGCTTCATGTCACAGTCCGTTTTGTCTGTTTGTCACACAATATACTTTATTTCCTTTGAACAACTGGGGCCAGGCCTTAGGGAGGACTGTACGAGAGCTTAATGTCACAGTCCTTTTTGTCTGTTTGTCACGCAATATACTTCATTTCCTTTTGACCATTTAAACGTGACATATTTATGGTTTTCTTGTTATTCAACGAATCGTCAAGCAAGTGACATGACTTGTTTGGTGACGCTTTCGTAGACTGCAGTCATAACGGTTTACAAATTGTTGACCACTTCTGTAAATTTAAATAGAAAACAAAGTAAATGACTGGGATAAAATTTCTTGTATTAATGTATCAATGAAACGAGGGACTGAGGAATTTTTTTCAGCACATTTGCGGTTCACGGTTTACCCTACCCTTATTTTCTAAAAATGAGTGACGTTTTTGGTGTAATTTTTTTGTAAATCAATTGAGTGTGTTGTTATGGACTTCTTTGGATATCACCTGACCGTTGCGTGACATCCCAAAGATAGGAATACCTAACAATTTCTAGCTTTCAAGTAGCCTGCGAGCAGGCTAGCTTTCAAGAGTTGCCACACTACCTAACCATTTTCAGTAGCTAAGTCCCCTCCAGATAGTCATTTTCTCATGAAATCTATGGTCGAGTCTCTGTTGACCAGCACAGAATTTAACAAGTGATATAGGTCTAACCACGAGTAAGGCTCGATTAAAAATGGATGCAGCGCGAATCGAATTCAAGTAACTGATATCCGAAAGATCATAATTGTAATTTCCAGTTATAAGATCCGCCTATAGTTGTTAGGATTGTGGATTCTGGGCCTAGTTGTTCAAAGCTTCATTAAGCGAGTACTGGTTTGCCTCGAACTTAAATAGTTGGAGTTTAACGATTTTGTAAGATTGCTTCAAGAGTTTTGCCGCAGGATTTTTTTTTCTGTCTCAAATGACAGTGACAAGCCTTTACAAAGGGCAACATTTACACTTAATTAGCGTTAATCAGCTTAGCTTGCATCCTTGAATTGACGTTGCTGCCCGTCTCCTTACTTGTTAAAAGTTttaggtaatagagcggttttcaaatgactgtcgaaaaaccaaaaccaaagcaactactccgaccaatcacgacagaggcaaacagcgcgttgaaccaatca

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2AJ76	Hemicentin-2 OS=Mus musculus OX=10090 GN=Hmcn2 PE=1 SV=1
O35136	Neural cell adhesion molecule 2 OS=Mus musculus OX=10090 GN=Ncam2 PE=1 SV=1
A8DYP0	Protein Obscurin OS=Drosophila melanogaster OX=7227 GN=Obsc PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000948 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR051275 all species →	Family	Cellular adhesion and signaling domain-containing protein	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11640 all species →	NEPHRIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005911 all species →	Cellular Component	cell-cell junction	Interproscan
GO:0050839 all species →	Molecular Function	cell adhesion molecule binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0030.g110.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.