Gene detail

Detailed information of amic_s0030.g113.t4 in Acropora microphthalma

Genomic Location: sc0000030_pilon:1632835...1645494
NR annotation: XP_015764578.1, PREDICTED: twitchin-like isoform X1 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0030.g113.t4

ATGGGATGCCGACAACGAGAGAGCTTTGTACGATGGCTTTTTGTGGTGGGAATTGCATTCGTGCATCAGGTTGCAGTGATAGATGCTGGGATCGAAATGCTTACCTTTGGCATCACCACCGTTGACAAAACATTCCGTATTGATTGTAAAGTCATTGACGAGGAGTTCCGTGGTTGGTTTGATTTGAAAGGGGAGGAAGTCACAGCGAGACGTGTACCAGGTCAACTTATACGGGCAAAAAAGTACGTTGAAGAAAAAGACAACGTCTACACACTGGTCATTCGGAAAGTTCAGTTCGTCGACGGAGGCAATTACACATGCAGAGGAGACAAAACAGAAAAAATATTTTCTCTTTTCGTTGAATTTGAAGTGATTCAGTTTCCTGAAGATCAAAATCTGTTTGTTGGGAGGACACAGACCATTCAATGTTCAGCCGATGGTTACCCTAAGCCAACATTTGTGTGGTTCAAAGATTTTTTTCGGATAAACCTCACTAATCCCCGTTTTAATCTGCTGCCCAATGGATCACTGCTTATCAGCCCGGTTCACGAGAAAGATAGGGGTGAATACGTTTGTCGTATAACGCAGCTGGGGGATCGCCAGGGAACAAGCCTACGGGAGCAAGAACAAGAGATAACTGTAACCGTGAGAGGTCCGCCGAGATTAAACGTGGAAAAGTCCACGAACCAAACTCAGCAGTACTCGTTCGTGGGAAGCCCAACACCTATTACTATATCCTGTGTTTGGTGGGGATATCCTAAACCAAAGCTTACCATACAGAAGGATAACACTGATCTGCCGAGCCAAAATGTGTCATTGAAGACGGATGATTTTCTCAGTTACTTGACGGTTTCTTTATTAACCGTCACAGACGATGACTTTGGAGCCTACACTTGTAATGCGTCAAATTCCTTCGGTTCTGCTTCACATGTTGTCGTCATTAACAAACAAGGTCCGCCGCGATTAAACGTGGAAAAGTCCACTAACCAAACTCAGCTGTACTCGTTCGTGGGAAGCCCAATACCTATTACTATATCCTGTGTTTGGTGGGGATATCCTAAACCAAAGCTTACCATACAGAAGGATAACACTGATCTGCCGAGCCAAAATGTGTCATTGAAGACGGATGATTTTCTCAGTTACTTGACGGTTTCTGTATTAACCGTCACAGACGATGACTTTGGAGCCTTCACTTGTAATGCGTCAAATTCCTTCGGTTCTGCTTCTCATGTTGTCGTCATTAACAAACAAGGTCCGCCGAGATTAAACGTGGAAAAGTCCACGAACCAAACTCAGCTGTACTCGTTCGTGGGAAGCCCAACACCTATTACTATATCCTGTGTTTGGTGGGGATATCCTAAACCAAAGCTTACCATACAAAAGGATAACACTGACCTGCTGAGCCAAAATGTGTCATTGAAGACAGATGATTTTCTCAGTTACTTGACTGTTTCTGTAGTAACCGTCAAAGACGATGACTTTGGAGCCTACACTTGTAGTGCGTCAAATTCCTTCGGTTCTGCTTCTCGTGTTGTCGCCATTAACAAACAAGGTCCACCCAGTGTCCCCAAGGATTTTACGTTACTCACCTCTTGTGATCACGTGACAGTGTCGTGGGAACCGCCTGTCTCCGATGGAGGGTTACCGTTGACACGATACTCTGTAAAGATATATTCCAATCACGGGTGGAATGATACCATATTGTTAGGAGTGAGCACAACAAGGTTCACATTTACAAGTAGAGAGGGCGTGAGACCAAGAAAAGAGTACACCGTAACGGTTCAGGCTTTTAACGAGTTAAAGGAAGGTGAAATAGCTCAAGGATCAGTTATCTCCGCTTACTGCCCCCCGAGAGGATCATTCAATATAACTAATTCCGTCACGAGGTTAAACAGCTCTAGTTTTACTCTCAAATGGACACGTCCTTCCTATGACGGGGGCGATCCAAATCTGAAATACGACATCGAATACAGCAAGGAAACCCCTGATGGGAAGTATATACACTGGAATACCAGGAAGAATATAGAGTCTCAAGAGTACAACGTGACTGGACTAGAGGGTGGAGGGAATTACTTGTTCAGGGTGTTTGTATCTAACATTGCCGCAAGGAAAAAAGAGCCCGCGAGCAAGGGGTTTAGCGTTGATAGCAGTGTTTCGTCCAAGGGTGAACCGTGTAAACCAGAAAACACCGGGGAAGCGTTGGTGTACAGCATGTCTGTCAACTGTACCTCGTTTTACATGCAAGTGGATTTTGCCCTCCATTCTCTTTACCTTGATAGAGAGACATTCCGATTCGATAATAAGTCGTGTGGTACTTACGCGGTCACGTCCAAACACGTCTCGCTGAGAACACCGCTTGACGCCTGCGGTACCATCAGATTGAGCAAAGGCGAGACAATAATCTACTCCAATAAAGTAGTCGCAGAAACCAAGGACAAGGCAAACATTCACGTGGTAGAATTTCCTTTCTCTTGTACTTATCGCGCCCATGAGACGATTGGAGTACCTAGTTTTCAACCCAGGAAAAAGGTCATTTTCTTTGAAGAGGGTTTCGGTAACTTCTCCTTCAATATGGATTTATATCGGAGTGGAAAGTACGTGTCTCCGTACAAAGTATCCGAGTACCCGGTTGCCGTGCATCCGTTTGGCCAGCTGTACTGTGAAGCCAAACTAGATACCTCTGACTCAGGGCTCATCCTTTTTGCTGAGAAGTGTGTGGCCACGCCTTCAATGAATCCTAACCATGCTGTCCAGTATATATTTATAGACAACGGGTAA

Transcript

amic_s0030.g113.t4

GGAGAAAGAACCTGAAATTTAATGCTGTTTTTAAACCAACTCTTTCACTCCGTTTAAGAAGATCATTGGAGAATGTGGCTTAGGACAGCTAATTAAGTCTCCGACTGTAAATTGACAGTTGAAATAGGGATTAATAACAAAGGGCACAAAAGCGGCATTGAATTCTGTCTGCGGTTTAATATTTAAATAATTTCGTCTCGTGAACACAATGGCGCCGAGGTCACTTCGTCAGGCGCAGAGTTCGTGTTGAAGTCTAAAGCTGTTTTCCTCCATGCTTGAGGTAGTCAGGAAAGCTTTTCACTTTGGGAATGGGATGCCGACAACGAGAGAGCTTTGTACGATGGCTTTTTGTGGTGGGAATTGCATTCGTGCATCAGGTTGCAGTGATAGATGCTGGGATCGAAATGCTTACCTTTGGCATCACCACCGTTGACAAAACATTCCGTATTGATTGTAAAGTCATTGACGAGGAGTTCCGTGGTTGGTTTGATTTGAAAGGGGAGGAAGTCACAGCGAGACGTGTACCAGGTCAACTTATACGGGCAAAAAAGTACGTTGAAGAAAAAGACAACGTCTACACACTGGTCATTCGGAAAGTTCAGTTCGTCGACGGAGGCAATTACACATGCAGAGGAGACAAAACAGAAAAAATATTTTCTCTTTTCGTTGAATTTGAAGTGATTCAGTTTCCTGAAGATCAAAATCTGTTTGTTGGGAGGACACAGACCATTCAATGTTCAGCCGATGGTTACCCTAAGCCAACATTTGTGTGGTTCAAAGATTTTTTTCGGATAAACCTCACTAATCCCCGTTTTAATCTGCTGCCCAATGGATCACTGCTTATCAGCCCGGTTCACGAGAAAGATAGGGGTGAATACGTTTGTCGTATAACGCAGCTGGGGGATCGCCAGGGAACAAGCCTACGGGAGCAAGAACAAGAGATAACTGTAACCGTGAGAGGTCCGCCGAGATTAAACGTGGAAAAGTCCACGAACCAAACTCAGCAGTACTCGTTCGTGGGAAGCCCAACACCTATTACTATATCCTGTGTTTGGTGGGGATATCCTAAACCAAAGCTTACCATACAGAAGGATAACACTGATCTGCCGAGCCAAAATGTGTCATTGAAGACGGATGATTTTCTCAGTTACTTGACGGTTTCTTTATTAACCGTCACAGACGATGACTTTGGAGCCTACACTTGTAATGCGTCAAATTCCTTCGGTTCTGCTTCACATGTTGTCGTCATTAACAAACAAGGTCCGCCGCGATTAAACGTGGAAAAGTCCACTAACCAAACTCAGCTGTACTCGTTCGTGGGAAGCCCAATACCTATTACTATATCCTGTGTTTGGTGGGGATATCCTAAACCAAAGCTTACCATACAGAAGGATAACACTGATCTGCCGAGCCAAAATGTGTCATTGAAGACGGATGATTTTCTCAGTTACTTGACGGTTTCTGTATTAACCGTCACAGACGATGACTTTGGAGCCTTCACTTGTAATGCGTCAAATTCCTTCGGTTCTGCTTCTCATGTTGTCGTCATTAACAAACAAGGTCCGCCGAGATTAAACGTGGAAAAGTCCACGAACCAAACTCAGCTGTACTCGTTCGTGGGAAGCCCAACACCTATTACTATATCCTGTGTTTGGTGGGGATATCCTAAACCAAAGCTTACCATACAAAAGGATAACACTGACCTGCTGAGCCAAAATGTGTCATTGAAGACAGATGATTTTCTCAGTTACTTGACTGTTTCTGTAGTAACCGTCAAAGACGATGACTTTGGAGCCTACACTTGTAGTGCGTCAAATTCCTTCGGTTCTGCTTCTCGTGTTGTCGCCATTAACAAACAAGGTCCACCCAGTGTCCCCAAGGATTTTACGTTACTCACCTCTTGTGATCACGTGACAGTGTCGTGGGAACCGCCTGTCTCCGATGGAGGGTTACCGTTGACACGATACTCTGTAAAGATATATTCCAATCACGGGTGGAATGATACCATATTGTTAGGAGTGAGCACAACAAGGTTCACATTTACAAGTAGAGAGGGCGTGAGACCAAGAAAAGAGTACACCGTAACGGTTCAGGCTTTTAACGAGTTAAAGGAAGGTGAAATAGCTCAAGGATCAGTTATCTCCGCTTACTGCCCCCCGAGAGGATCATTCAATATAACTAATTCCGTCACGAGGTTAAACAGCTCTAGTTTTACTCTCAAATGGACACGTCCTTCCTATGACGGGGGCGATCCAAATCTGAAATACGACATCGAATACAGCAAGGAAACCCCTGATGGGAAGTATATACACTGGAATACCAGGAAGAATATAGAGTCTCAAGAGTACAACGTGACTGGACTAGAGGGTGGAGGGAATTACTTGTTCAGGGTGTTTGTATCTAACATTGCCGCAAGGAAAAAAGAGCCCGCGAGCAAGGGGTTTAGCGTTGATAGCAGTGTTTCGTCCAAGGGTGAACCGTGTAAACCAGAAAACACCGGGGAAGCGTTGGTGTACAGCATGTCTGTCAACTGTACCTCGTTTTACATGCAAGTGGATTTTGCCCTCCATTCTCTTTACCTTGATAGAGAGACATTCCGATTCGATAATAAGTCGTGTGGTACTTACGCGGTCACGTCCAAACACGTCTCGCTGAGAACACCGCTTGACGCCTGCGGTACCATCAGATTGAGCAAAGGCGAGACAATAATCTACTCCAATAAAGTAGTCGCAGAAACCAAGGACAAGGCAAACATTCACGTGGTAGAATTTCCTTTCTCTTGTACTTATCGCGCCCATGAGACGATTGGAGTACCTAGTTTTCAACCCAGGAAAAAGGTCATTTTCTTTGAAGAGGGTTTCGGTAACTTCTCCTTCAATATGGATTTATATCGGAGTGGAAAGTACGTGTCTCCGTACAAAGTATCCGAGTACCCGGTTGCCGTGCATCCGTTTGGCCAGCTGTACTGTGAAGCCAAACTAGATACCTCTGACTCAGGGCTCATCCTTTTTGCTGAGAAGTGTGTGGCCACGCCTTCAATGAATCCTAACCATGCTGTCCAGTATATATTTATAGACAACGGGTAATGTTTCCAATTGCAGTTTTCAGATACTAGTACGTTGTTGCGTTCAGTATTGGTTAAtagagaatttaagaagct

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P34082	Fasciclin-2 OS=Drosophila melanogaster OX=7227 GN=Fas2 PE=1 SV=1
Q3UQ28	Peroxidasin homolog OS=Mus musculus OX=10090 GN=Pxdn PE=1 SV=2
Q92626	Peroxidasin homolog OS=Homo sapiens OX=9606 GN=PXDN PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006973 (this species only)
Transcription factor family	CSL · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF00100 all species →	Zona_pellucida	Zona pellucida-like domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR001507 all species →	Domain	Zona pellucida domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR042235 all species →	Homologous_superfamily	Zona pellucida, ZP-C domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10075 all species →	BASIGIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0070593 all species →	Biological Process	dendrite self-avoidance	Interproscan
GO:0098632 all species →	Molecular Function	cell-cell adhesion mediator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0030.g113.t4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.