Gene detail

Detailed information of amic_s0030.g27.t1 in Acropora microphthalma

Genomic Location: sc0000030_pilon:433055...434158
NR annotation: XP_029186795.2, three prime repair exonuclease 2-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R1A9	Three prime repair exonuclease 2 OS=Mus musculus OX=10090 GN=Trex2 PE=1 SV=1
Q9BQ50	Three prime repair exonuclease 2 OS=Homo sapiens OX=9606 GN=TREX2 PE=1 SV=2
Q9BG99	Three-prime repair exonuclease 1 OS=Bos taurus OX=9913 GN=TREX1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010614 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00929 all species →	RNase_T	Exonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR013520 all species →	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR040393 all species →	Family	Three-prime repair exonuclease 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13058 all species →	THREE PRIME REPAIR EXONUCLEASE 1, 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000738 all species →	Biological Process	obsolete DNA catabolic process, exonucleolytic	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008296 all species →	Molecular Function	3'-5'-DNA exonuclease activity	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10791	TREX2; three prime repair exonuclease 2	EC:3.1.11.2	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.