Gene detail

Detailed information of amic_s0030.g33.t2 in Acropora microphthalma

Genomic Location: sc0000030_pilon:571340...595788
NR annotation: XP_029186797.2, GTPase-activating protein-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0030.g33.t2

ATCAAACAATAGAAAACACCAAGTTGTTTACCTTAACACACTCCAAGCATCACAAAAATCATCAACATGACAACAAAATTTGTGAAAGCCATAACAGAATCATTGCTTAAAGTTCCATATGGTATCAGGTGGCTGTGCAGTGCTATTGTCACCTTAGTCAAGGAGAAGTACCCTGATGTTGGTGATGCAAGTATTAATTCTCTGATTGGAGGATTTTTCTTGTTGAGATTTCTAAACCCAGCCATTGTTACACCCAAAGCTTATAAACTTGTTAGCAGTGCTCCAAGCCAATGTGCACGGAAAAACCTAACCATGATTGCTAAGCTCATACAGAGTATGGCCAACAAGCATGTGGTTGGCAGTCATTTTAAGGAGGAACACATGCAACCGCTGCATCCATTTGCAATGCGACATGTAAATGAAATTCAGAATTTCCTCACAAAATTATTTAATTTTAACAAAATCACAGATTTTTATGAAACATTGGAGATTGAACAATATTTATCACTTTCAAAAGACATTAAAGTAACAATCACACCAAACGAGATGTACAGAATTCATGAGTTGATTCTCAAATACAAAGAAGAACTTGCTCTTACCGAAGATGACCCATTACACATAATTCTAGATGAGTTAGGTCCCCCTGGAAAACAGTTGAGTTACAGCATGAATGCCACAATCAGTCTGGCTCTCACAAACAGATGGGACCACAGCAAAGTACTCAGGAGTGATTCCATAGAAATGCTGACTTTCAGGACTCCACCAGTGCAACAGAGATGCACAAAGGAACAATTAAGGGCGCTGTTTATCAAACTTTTGTCTATGGACACCAGACTGATGGAGGAAAGTTCTCTTCTTGATGTTGTAACCAGGGCGCATTTTTTACCAGCTAATCGCCAGAGTGGCGGAGAGGAAAAAGATGGTCAAGACACCCAAGAACGACGCAAAAGACTGGAAGAGCAGAAGTCGAAAATTGCTGGCTACATTTATAAGAAGTACAAAGCCCACCCGGAGTTAAAGGGCATGTTATCCAAGGAGCCAGTTTTCTTCCAAGAAATAAAACAGGAAGTCCAAGCCAAGATGCAGAGATACTACAAACTAGCGCCTAAAGTCAAGAGTCTTCAAAATGTGTTAGAGACCCTGAAGAAACAAAATAGTTACCTCAAGGATCAGTTGAGCGTTTACAAAGTATACTTAAATTCTGTAAGAACAAAAGCAGCAACCCTTTCGTCAAAGAAATGTATACAGGATGTTACTCATTCAGAACGGAGCGTGCCAGTGCCTATTGACTTCACTTATTCTCAGCTTGAAAGGGAGGGAGTTATCTCGCACGGGGACTGGAGCCAAAGACTGACTGAAAAAAGAAAACCGGATTTGACAATAACAATCGCTTGTCCACAACCCGGTGTTTACCAAATAAGTCTTCGAAATAGAGGCGACCCCAAAACAGATCACGAAGTTCACTTAAATCTAGAAGAGTTATTGGAACTACAACACCATCGAGAACCGGGCCAGCGCGATGCGTCCGCTAGCAATCGCTGTATTCCTCTCGTTTCGTCTCCCGTGTAAGGTTTTTGGTATCTGAAACAACTGAAGGCGGTTGTTTGGGGATGCGCTAGAGGAAATCCCATAGACTCCGGTTCTTCGCTTAAGTGAAATCGTGTCACTTGACGTAAAGCGGTTTTTGTCATTTCTTCACAAGACGTTCGCTTCAACGTGAGTTTACCTGAACACGGTGCTAATAAACAAGTTTCTTTCTCTGGGATTTATTTAGTAACGTTTACTAATGCCTTGATGCAGTCAGTTGTTGTACATAAAAGAAACTAGATTATAAAGTGGAGTGTCTGGTTTCTAATTTTAGGGCCCCACTGCGGTCAAACCGCAGAATAGAGCGAGAATATTTGAGACTGTTTTTCTAAACGTGTTAAAGAATTGTGATCTGTCATCGAAGAAAATATTTTTTTGTTACTTAACCGAGCCAAAGATGATATTTTTGGTGAAAACATTGGCATTTCCATATGGTAATAACACATTGCTAGCCTGGGAAAATTTCCTATGACATTCAATAAAGATATTTGACCTTA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002529 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03836 all species →	RasGAP_C	RasGAP C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000593 all species →	Domain	RasGAP protein, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14149 all species →	RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0046580 all species →	Biological Process	negative regulation of Ras protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0030.g33.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.