Gene detail

Detailed information of amic_s0030.g7.t1 in Acropora microphthalma

Genomic Location: sc0000030_pilon:161266...175092
NR annotation: XP_044180272.1, TBC1 domain family member 23-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0030.g7.t1

CGCTAAAAAAAAAAGGCCACTTTGGAAGGGAGGCACGGGAAACGGATAATGATGACGTTTCCAACATGGCGGAAGGTGGAGGGATTGACGATGTTGGCTGGCACACAGATTTAGTATTAGCATTGTCAAAACAAAAAGACGTCGACAGATTGCGTGAACTTTGTCGTGGACGTAAAATTCCAGCAGAGAATAGAGCAGACGTGTGGAAGGTTTGTCTGAACGTTGTGGGAAAACCGGATGCCTTGTCGACTTGGGATGGCCTCCTTGATCTTCAAGAGCAAAACTGTATCCGTGACGATTGCCGGAAACAAGCTACAAAACTTCGTCTGCCTGAAGATGAAGCAGAAGAGGTTGCCAGGGACATGGAAGGCATCATAACCTTCTACTGCAAGTCCCGTAATGAAAAGTACCACCCTACCAGTGGTCTGACAGAGGTACTTGCACCTATTATGAACTTGGAGCTCCCAATGAATGACGTCTACAACTGCTTTTATGCTATGTTGTACAAGTACATACCAAGAGATTGTGTACGAGATGGGAAGCCATTTCACCTCTTTCGCCTTCTCTTGCAATACCATGACCCAGAGTTGTGTACATTTTTAGAGTCAAAGAAACTCTGGCCTGACATGTATTGTCAGCGATGGCTCAGAAGCCTATTTGTGGTTTCATGCGAACCAGAGGTGTTACGAGCCATTTGGGATTTGTACCTCTTGGAAGCTGATCCCTTTTTAGTATTTTTTCTAATACTTGTTATGGTCATAAATAGCAGAGACACACTATTTGAGATGGAACATGAAAACAAGACTGAATTGTTAGAAACTATCTCTTCAATTCCTTTACAACTGGAAGAAGATGACATTGAAGACTTCTGTTCATTAGCGCAGTACTATGCTTCAAGAACACCTCAGTCATTTAGAAATGACTATCACAACCAACTATTTGGTATCAAGACAATCAGTTCCAACAGTCTCTCCCAAGCTCTTTGTTTGCCTGTGTCCATTTCTGAACTTGTGGAAGTGAATCAGTCCGAAAGGAAGGATGGGGTGAGGTTCTTTGTGGTAGATTGCAGACCTGCTGACCAATACAACAGCGGCCATCTTCCTACTGCGTTTCATTTGGATGCAAACTTGATGTTGCAAGCACCATCAGAATTTGCCACAGCTGCCAATGCACTGTTTGCAACCCAACAGCAATCCATTGAGGCAGGTTCTGCTGCAAGTGGTGAACACCTGTGTTTTATGGGTTCAGGACGTGAAGAGGAAGATCAGTATGTTCACATGGTCATCGCTAACTTCCTTCAGAAAAAATCCAAATATGTCAGTATTGCCTGTGGGGGGTATCTTGCCCTCCATGATTTGTTATCTGACCAGTTATCATCCGGACTGGCGGATCATGTCCCTAATACTTGCATTGTATGCAATCCAGAAGCTTTCTTAGAAGCTGAGATTCCAAAGAGAGATGGCTGGGCTTATATTCAAAACAGACACCACCTCGGCTCGATAATGAAAATAACCTCCAAGAGGAAACATCCGGACTTGATAACATTTAGATACGGAACAAGCGATGGGGAAAATATTGAAGTAACGGAAACGGAGAGATTTGTTATTCCAAGTGCAAAGAAGGCGACACAGAAAATTAAAGATAGGATACTTCAGTTAAGTGATGGACAATAGAGATTATCTTTCCAACGAATAACTTCAAAGTTTTATAATATGTATTGCGACTTAGTCTCGTTCCCAGGCTCATATGTGACGAGCGAACCGAGCTGTTGCTGTAGGCTTAAGGCCAAGTGCTCTCAGGCGTGCGCGGTTTGAACTTCTGTGTATTGGTCAAAGGGACATTGGATATTAACATTACACCAGTCAAAGAGAACTCTGCTGTTGACCCAATCGGCTTTAGTTTTCCCGATCCCTGTCGGGTATCGACAATGCCTATCGAGAACCACTGGGGACGAGACGTCTGAGTCAATTCTTGACGTTTACTTTATGTAAAGAATATACCAAAAGATTCTGATGCCGTTGTAGAGGGAACTCAAATCATGAATCATTACCCTCAGTTTTAACTCCAATTTTAAGACAAATTCTTTAACTCGCGTAAGTTTCACGCACGCAAGAATTGGGAAAATCTCAGCTATAACATCTTTTCTTTTAGTTTGGTTATTTTTTTCTGTGAGTGATTTGTCGTTTTTCCCTAAAAAAAATCACATTTAATTATTTATGATACCTATGTCGTGGGTGAAACAGGCTAAATAAGTATTTTAGCAAGGGTAACAAAACAAAGTCAAAATTTACGTCTCATTAAAAGCACAATTCTCAGGAGAACAGTAAAATATGGTTATAAAGAGAACATTCTCGAAAAAAGGGGTTGCTGTCGTCTGATTTGGACAATTGTTTCAATTTGTACCAAATGTTTTTCGGTTCCAACTTTTGTGATTATGAATAAGAATAGATATAATGTATTTATTTGTGCGCGGGCATTCATTTTCAAAAATGCCACAGTACTGGTGCGTTTAATAGATAGTCTATTAAAGGACAAGTGTTTTATCTCTTTTCTCCTTGTGGCTTTGTATCCGTATTTgtataggtaatcgcatgggcaatgagtaaaattaaggattaacatcacttgtgttcacagaagttgctgaaattgcccaagtcacgcagggcaattatgagggcaatttcagcaacttcaagtgatattaatccttaatttttcgtggatccgtttcgattacttgtaaataacatagagagggaagttactgaatttctgaatgcataaaactgcgacAGTGTTTGGTCATCGCTCTCGTACTATTCTAAATTTGCTTGAagatttctttcgttcgtccacattttgaacaattttttccataacttcgttcttgctattcttcgtgttttcattatcggacttgtcctttaatttttcaatatattcctcttcagctatctcaaaacgagacgtcattgttccagaaaaacaatttctcggtagcatgagttgtttctagataatctgaggaccaatcgtgaccgatggattttgctctcttcactatcaaaattaagaaaaaatacgctcttcattgatcaatcagcattcagtaattttaccctctttgttgttaaaagcaaCTTCTCCGAGTCTTGAGTCAGAGCTCTGATTTTGAGAATAGTTAGCGCTGTGCAAATACACCGAAAGCGAGCTTACTGGAGGACAGGCACAGACGAACGGAGACTCATACAACCGCTGGCTTGGTATTTGTATTCCCTTTCATATTCCTTTAACAAGCATTTCGTATGTCGCGTAGTTGTCAGAAGTTGTGTAAAGCTATACGTCGATCACTAAAGCTACTAATACTAATAATTGAAATATCGGCGGAATAGTTTTTTATTTTAGAGAATATCACTATCCCCTTTCAAACAACTGGCTTCCGCGAACGTTTGAACCATGGCATCTCGTTTAGAGGCCTTCCATATAGGGATGCAGAGTTGCTGAGGAAGTGCTTGGAATATTGGTGTCGTTTTAAGAGAATTACTGGTTATGATAGTGTCATGAATATAAAACGGCATTTCGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5F415	TBC1 domain family member 23 OS=Gallus gallus OX=9031 GN=TBC1D23 PE=2 SV=1
Q5R8I6	TBC1 domain family member 23 OS=Pongo abelii OX=9601 GN=TBC1D23 PE=2 SV=1
Q8K0F1	TBC1 domain family member 23 OS=Mus musculus OX=10090 GN=Tbc1d23 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005967 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan
PF19430 all species →	TBC1D23_C	TBC1 domain family member 23 C-terminal	Domain	Interproscan
PF00581 all species →	Rhodanese	Rhodanese-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR045799 all species →	Domain	TBC1 domain family member 23, C-terminal domain	Interproscan
IPR036873 all species →	Homologous_superfamily	Rhodanese-like domain superfamily	Interproscan
IPR001763 all species →	Domain	Rhodanese-like domain	Interproscan
IPR039755 all species →	Family	TBC1 domain family member 23	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13297 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan
GO:0099041 all species →	Biological Process	vesicle tethering to Golgi	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22555	TBC1D23; TBC1 domain family member 23	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.