Gene detail

Detailed information of amic_s0030.g81.t1 in Acropora microphthalma

Genomic Location: sc0000030_pilon:1251609...1267802
NR annotation: XP_029183773.2, remodeling and spacing factor 1-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0030.g81.t1

ATGGCGTCCACTCCAGCAAGTAGTGAAGTCGATCCAGACGAAGATGCAGGGACGACGCGATTTGGCGTGGAAAGGACGGGAAGAGCTGCCGAATATCCAGAATTTGCAATCATTTGGTCATTTCTGCAGAATTTTAGACATCTCTTGCATTTTCCTGATCTTTCGTTGGACGATCTGGAGGATGGATTTAACAGCCATTCGTCAAAGAACGGTAACGTCAGTGTGATAGAAGAATTGTATAAGAAACTTTTAAGACGATTAGGAATCTCTGTAAACCCAGAAAAATGGGAAAAGTCATTGTTAAAGGTTGTCAGAGAGCAAAACTTACTCTGTGCTTGGGATTTAGAGCAATTTGGTTATGAGGAACTTAAAGTTTCATCCAAGCTGGAGCTTTTCAAGATGTTGCTAGAATGCCAGTTTGATCAAAATGATAAACTCAAGAGCTCAGTGAACAAAGGCTTTGATGCTGAGGATCTACGCATGCTGCCAATTGGACGAGATTTGGATGGCTTCATTTACTGGTATCATGAGGATGACTCTAATGGTGTGCGACTGTATACCACTGAAGAAGATGAAGTGAATTGTGAATCATGGAGACTTTTGGCTGGGGAAACTGAAGAACTTGCCACAGTTGTTGAATTCATTGAGTCCAAGTCTGAAGTGAACCCAAAGGAAATAGCTCTTGCAAGGAGAGAGGAGATGAAAAAGAAGGCAAAAACAAAAAACTCAGGGAAAAAGAAAGGGAAAAAAGGCAAAAAGAAGGAATCTAGTGAAGATGATGAAGACTATGACGATGACAATCCATGTGCGCGATGTTTCTCCAATGTCAGACCTGAATCAATACTGTTGTGTGACAAGTGTGATGCAGCCTATCACACAGCTTGCCTGCGTCCCCCCCTTCTAACTGTGCCACAGGGAGACTGGTTCTGTCCATTCTGCCAACAGCTGGTACTGTTGGGGAATCTCAAAGAGAAAAAGGCGCGCTTAGCTGCCCGGATGAAGTTGAGGCAAAGACGAGCTAAAAGGTTGGGCTTCGCTGGAATCGACTTGAATAACATCTTACAGAAGGCGTCAGATGATGAGGAAGATCAAAGTATCAGACGTTCGGGTCGCTCCAGAAAGAACGTGGACTATACTTTTAAGGAATTCGAGGAAGACATCACATCAGCTGTGGAGAACGACAAAAAGAGGTTTAAAACAGGAGAGGTGAATGGAGAAGAAAAAGGGATGCTGTATTCCAAACCCGCTTATGAAACGGGCGGACTACTTGACACAGCGCGTCGAAACACACGCAGATCCCGAAGATTGATGGACCTTGATTTCGAAAGTGACTCGGAGTCGCGGACGAGTGGCTACGAAGTCGAAGTGAACTCCGATGATGAGGCTCAGAGTGAATTCGGTCAGCAGACGTCGAATCTTCAAGGCAAACTCAGGAGGTCGAGGCGGGTTATTGATGACGATGATGACGAGGAAGATGGCAATGGCGCCTGTGATGACGGTAGGAAAAGTTGCGACGCCGGGGGAACAAGTTGCTTGAAAACTGTAGGAGGTGAGAAAGATGAAGGCGAGAAGAAAGAAAATGCTAAGAGTCAAGAACCCTGTGACACGAAAAAAACATCGGGAGAAGAAAACATGGAGAGGGGTGATGAAGCAGCTGGAAAACCATTCGTTTCAGAGGCAAAGACGAATAGCGAAAGGAAGAAAGACAAAGATGAAAAAATTGTAAGTTCAAGGAGGGAAACCCTAGTGGATGCGACTGCTACTGTGATGGCGTCACAACGTCAAAACACAACTTCCGCCGGAAACAGGATTCAACCCCATTCCCGGATAGCGTCTGTCGCTCCAGTAGCGCGAAGTCAACCTACACCTAGCATGAACAACTTCCGGTCCCCTCTGGGGTATGTGCCCGAAGGGGTGTTTCCGAACCCTCCAAATTACGAAACACTGAAGCCGCAGTTCCCAGGGAAACAAGGACTTGGCCAGCTGGGGTCAAGCTTTGTTGGAGTTAGTGTGGCGGGGACAAATATCGCGGGGAATAACTTCAGCGGAAGTGCAAACTTCTCTCCCAAGAACGCTCCTGGTATGCTGCATGAAGGGCCCACTTTTCAGGGGTCCCAAGGCATGGGTACGCAAAATAGGAGAACATCCTTCGGAGAGGCCACTCGTTCGGGTCTTGGTCAAGGAGGGCAAAATACTTCAGCACCAAATTTAGAAAGGTCATTTAGTGGAGTTACAAATGAGGTCGGAGCAGGAGTTACGAGCTTTGGGGCTTCGACCAATTTTGGTGCGCAAGATATGCCTGGATCGTTTTGGGGTGGCCAGAACGAGTTAAATAGCGTTTATAATTATCAAAGATTTGGCCAATCGTCTGGGACAGTGCAAGCTCCCGTCACTGGTCCCGCGAACAAACAGACAGTGCCACCAGCCTACCCGTCAGGGTCGCAGTTTGGCGGTTTCAGTCAACAGTTCCAAGCGACTTCCAACGTCCAAAATTTCATGGCTTCTCAACAAAGCGGAAACTTTACGAATCCAAGTCACTATTTTTCCACAATGCTTCAACAGCCACCGCCTCCATACGCGGCAAGCAATTCGTTAAATGCGGACGCACGCATGAGCAGTAATCAAGGAAACAGCAACATTATCGGCAATCAGTGGACCTATCCCGAGGGTTACGGGTATTATAACGGGCAAGGAAATACCGCGGGACAAAGCTTTTGA

Transcript

amic_s0030.g81.t1

CCGAATTCTGCCGCCTCCCCACAAGGCCTTGCAAGCTTACATACGCTCAAATCCCGAGGGAGGCTGGATTCCAGCATAATTTATTGTCAATCAAAATGGCGTCCACTCCAGCAAGTAGTGAAGTCGATCCAGACGAAGATGCAGGGACGACGCGATTTGGCGTGGAAAGGACGGGAAGAGCTGCCGAATATCCAGAATTTGCAATCATTTGGTCATTTCTGCAGAATTTTAGACATCTCTTGCATTTTCCTGATCTTTCGTTGGACGATCTGGAGGATGGATTTAACAGCCATTCGTCAAAGAACGGTAACGTCAGTGTGATAGAAGAATTGTATAAGAAACTTTTAAGACGATTAGGAATCTCTGTAAACCCAGAAAAATGGGAAAAGTCATTGTTAAAGGTTGTCAGAGAGCAAAACTTACTCTGTGCTTGGGATTTAGAGCAATTTGGTTATGAGGAACTTAAAGTTTCATCCAAGCTGGAGCTTTTCAAGATGTTGCTAGAATGCCAGTTTGATCAAAATGATAAACTCAAGAGCTCAGTGAACAAAGGCTTTGATGCTGAGGATCTACGCATGCTGCCAATTGGACGAGATTTGGATGGCTTCATTTACTGGTATCATGAGGATGACTCTAATGGTGTGCGACTGTATACCACTGAAGAAGATGAAGTGAATTGTGAATCATGGAGACTTTTGGCTGGGGAAACTGAAGAACTTGCCACAGTTGTTGAATTCATTGAGTCCAAGTCTGAAGTGAACCCAAAGGAAATAGCTCTTGCAAGGAGAGAGGAGATGAAAAAGAAGGCAAAAACAAAAAACTCAGGGAAAAAGAAAGGGAAAAAAGGCAAAAAGAAGGAATCTAGTGAAGATGATGAAGACTATGACGATGACAATCCATGTGCGCGATGTTTCTCCAATGTCAGACCTGAATCAATACTGTTGTGTGACAAGTGTGATGCAGCCTATCACACAGCTTGCCTGCGTCCCCCCCTTCTAACTGTGCCACAGGGAGACTGGTTCTGTCCATTCTGCCAACAGCTGGTACTGTTGGGGAATCTCAAAGAGAAAAAGGCGCGCTTAGCTGCCCGGATGAAGTTGAGGCAAAGACGAGCTAAAAGGTTGGGCTTCGCTGGAATCGACTTGAATAACATCTTACAGAAGGCGTCAGATGATGAGGAAGATCAAAGTATCAGACGTTCGGGTCGCTCCAGAAAGAACGTGGACTATACTTTTAAGGAATTCGAGGAAGACATCACATCAGCTGTGGAGAACGACAAAAAGAGGTTTAAAACAGGAGAGGTGAATGGAGAAGAAAAAGGGATGCTGTATTCCAAACCCGCTTATGAAACGGGCGGACTACTTGACACAGCGCGTCGAAACACACGCAGATCCCGAAGATTGATGGACCTTGATTTCGAAAGTGACTCGGAGTCGCGGACGAGTGGCTACGAAGTCGAAGTGAACTCCGATGATGAGGCTCAGAGTGAATTCGGTCAGCAGACGTCGAATCTTCAAGGCAAACTCAGGAGGTCGAGGCGGGTTATTGATGACGATGATGACGAGGAAGATGGCAATGGCGCCTGTGATGACGGTAGGAAAAGTTGCGACGCCGGGGGAACAAGTTGCTTGAAAACTGTAGGAGGTGAGAAAGATGAAGGCGAGAAGAAAGAAAATGCTAAGAGTCAAGAACCCTGTGACACGAAAAAAACATCGGGAGAAGAAAACATGGAGAGGGGTGATGAAGCAGCTGGAAAACCATTCGTTTCAGAGGCAAAGACGAATAGCGAAAGGAAGAAAGACAAAGATGAAAAAATTGTAAGTTCAAGGAGGGAAACCCTAGTGGATGCGACTGCTACTGTGATGGCGTCACAACGTCAAAACACAACTTCCGCCGGAAACAGGATTCAACCCCATTCCCGGATAGCGTCTGTCGCTCCAGTAGCGCGAAGTCAACCTACACCTAGCATGAACAACTTCCGGTCCCCTCTGGGGTATGTGCCCGAAGGGGTGTTTCCGAACCCTCCAAATTACGAAACACTGAAGCCGCAGTTCCCAGGGAAACAAGGACTTGGCCAGCTGGGGTCAAGCTTTGTTGGAGTTAGTGTGGCGGGGACAAATATCGCGGGGAATAACTTCAGCGGAAGTGCAAACTTCTCTCCCAAGAACGCTCCTGGTATGCTGCATGAAGGGCCCACTTTTCAGGGGTCCCAAGGCATGGGTACGCAAAATAGGAGAACATCCTTCGGAGAGGCCACTCGTTCGGGTCTTGGTCAAGGAGGGCAAAATACTTCAGCACCAAATTTAGAAAGGTCATTTAGTGGAGTTACAAATGAGGTCGGAGCAGGAGTTACGAGCTTTGGGGCTTCGACCAATTTTGGTGCGCAAGATATGCCTGGATCGTTTTGGGGTGGCCAGAACGAGTTAAATAGCGTTTATAATTATCAAAGATTTGGCCAATCGTCTGGGACAGTGCAAGCTCCCGTCACTGGTCCCGCGAACAAACAGACAGTGCCACCAGCCTACCCGTCAGGGTCGCAGTTTGGCGGTTTCAGTCAACAGTTCCAAGCGACTTCCAACGTCCAAAATTTCATGGCTTCTCAACAAAGCGGAAACTTTACGAATCCAAGTCACTATTTTTCCACAATGCTTCAACAGCCACCGCCTCCATACGCGGCAAGCAATTCGTTAAATGCGGACGCACGCATGAGCAGTAATCAAGGAAACAGCAACATTATCGGCAATCAGTGGACCTATCCCGAGGGTTACGGGTATTATAACGGGCAAGGAAATACCGCGGGACAAAGCTTTTGAGTGAAGGTGACTAAGCTTACGTTGGTGGTGAGGCAACTGCGCATTGACATGACAGTTTTTGTATCAAAAGCTGTTTTTCTGAAGTTCATTTTTATTTTGCGGTTGGAATAATTTATTTCGTAATTACCACAGGGATGGGACGGTTTTCTTACTATATATGTTTCAATTTGACTAGAACTCTTGGAAAAAATAAACCATTCTTTTTGGCGGACGATGGTAGTAACAAATGGAAGAACGTGCCTTCGGGACGAAAAAAGTTTTGTTCGAGTAAGAAACTCAAGCTGGCATTTACAAGTTGCGTGTGTGAATGGGGTCAGGCAAAATTTTACCACTACCATTTTGGATGGTTTTCATTTTTTTTAGCCTTCTCGGATTTAAATTTTTCGACCCTTACAGGTAAGTTCTGTGACGTCATAGCTGAATTGTAATGGCCTTATAATGAAATATCCGCTAACTTTGGACTTAACTCGTATTCAAGGCGAAGGCTAAAGCATCCTGTTTATTCCGCTGCTGATAGCACAATGAAtacttaacaattag

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96T23	Remodeling and spacing factor 1 OS=Homo sapiens OX=9606 GN=RSF1 PE=1 SV=2
Q9FNE9	Histone-lysine N-methyltransferase ATXR6 OS=Arabidopsis thaliana OX=3702 GN=ATXR6 PE=1 SV=1
Q9SGH2	Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana OX=3702 GN=MBD9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006066 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan
PF02791 all species →	DDT	DDT domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR018501 all species →	Domain	DDT domain	Interproscan
IPR028938 all species →	Family	Remodeling and spacing factor 1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14296 all species →	REMODELING AND SPACING FACTOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0031213 all species →	Cellular Component	RSF complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11657	RSF1; remodeling and spacing factor 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.