Gene detail

Detailed information of amic_s0031.g34.t1 in Acropora microphthalma

Genomic Location: sc0000031_pilon:563869...590191
NR annotation: XP_029188020.2, nuclear pore complex protein Nup98-Nup96-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0031.g34.t1

ATGTTTAGTTCGAATACACCATTTGGAACTGGCGGAAACTTTGGAACTAGCACAAGCTTCGGGACTGGAACAGCTTTTGGTGCAACTCAGGGTACAGGGACTCAGTTTGGTACAGGTGCTGGTTCCAGTTTATTTGGAAAGACCCAGACAGGCTTTGGTGGTACCTCATTTAATCAGCCACAGAGTTCAGCTTCAACTGGTCTGTTTGGAGCCACATCTACAAACACTGGTGGAAGTTTATTTGGAGGGACACCATCTGGAAGCATCTTTGGACAGCAATCAACTGCACAACCCGCATTTTCAGGTTTTGGGACTGCAACTGGATCAAGCTTATTTGGCAATGCAGGAAAAAGCACAACAGGCACAAGTAATTTTGCAACACCAGGACAAACATCCACCTTTGGATCAACAGCTACAAGTGGATTTGGAACAACTGTAGGCTCCAGTTTATTTGGTGGCAGTGCAAACCCTGCTGGTACCCTCTTTGGAGCAGCAACTCAACCAACCACATCTTTATTTGGACAGAGCAGCACTGTCTCAGGATTTCAAGGATTATCATCTGCTGGTGTGGGAAACACTGGAACACCTATACCTTTTACTGTCGTTACTTCAACTGATGCTATAATGAAAAATGGTGTCACGCAAAATGTCAGCACCAGAAATCAGTGTATCACAGTGATGCAACCATATGAAGGCAAGAGTATAGAGGAATTGAGGATTGAAGATTACGATGCAGGGCGTAAAAGTGGAGCCACTGGTGGGACAGGCTTTCCTGGGCTGTCTACAAGCACAAGTTCTGGTGGTGGTGGTCTTTTTGGAAATACTGGGACATCAGGCTTTGGGTCGTCAGGTTTTGGACAGAAATCTACAACTGGACTTGGCGGAACTAGTGGTACCCTGTTTGGCAACACAGGAACCACATCATTGTTTGGTCAACAGCAGCAGCAGCAACAACAAACAACAGGGTCTTTGTTTGGACAGAAGACAGGGAGTCTGTTCGGCGCATCAACGTCAGGCACAGCAACAACTGGGTTTGGTCAGGGATTTGGTACAGGAAGTAGTTTGTTTGGACAGAGTTCCTCTGGACAGACGACTAGTCTGTTTGGTTCTACAACAACTTCTGCTCCTACTGGGCTGTTTGGCACTCAGGGTACTGGGTTTGGTCAGACGCAAACTGGTACAGGACTGTTTGGACAAACTCCTGGGTTTGGACAAACACAACAACAGTCCTCTCTCTTTGGAGGGAAACCATTTGGAACTACTCTTGGAACTGGAACTGTTGGTGGCATATTTGGAGGACAAAACAAACCTCAAACAGGATTCAGCTTTGGGAATACCACTGGAGGCTTGGGTACAAGTCCATTTAATGCATCCACAAGCACTGCTGGTGGTCTCTTTGGCGCAAAACCAGCTGGGTTTGGTACAGCGACTGCCTTTGGAACTCCAACTGGTACAGGCTTGTTTGGAAACACAGGGACACTTGGCACAACAGCAGTACTTGGCACAGGGACACTAGGAACTGGTACTTTCGGGTCATTGGGCACTCAACAAACAGCTGGTCTTGGGATAGGTGGCCTTGGGAGTAACCAAAACACAGCTGCAGTGAATGCTTTGCAGCAACAATTGCTGGAACAGCAGTTACAATTTCTGGCCAATTCTCCATTTGGTGACTCACCACTGTTTAGAAATTCTCTTGTGGAGAAAGCCAGGGCAGAGAAAGTATCATATACTACTTCCAGCTCCCGTCAAAGAGTTTCAACAACAAATTCTCATTATAAGGTTTGTGCCCGGCCTGCTCCCAGAATTAAACCAAGACCAATAAATAACCACACCATGAATAAGTCCAAACTGTTTGAAGGATTGGAGGAAGATTCAGGTTTGAGTCCAGGCACATTTGTCCCTAGAAAGAACATAAAAAAGCTTGTGATCAAAAGCAAGTCAGTCACAGAGGATTCACCAATCTCAGTCTTTGACACAACGAGAGTCAAGCTTCACGCCTTGGAAGGAGAAGATGATGTTTCAGTGGCAAGCATTGCTCTCCCTCTCTCGCCTCCTTCATCGCAACATACTTCACCGATAATGAGCTCAACTGTTTCTAAGGGTGTGATTTCTAGGGAGGAGCCAGACAGCAGAGCCAATACCAGTGATACCATGAGTCCAATTGGAGTCAAATTCTCCCAAGGTGGAGTGAAATCATCCTTAGACACAACAATTGCTGACTTAAATGTTCGGCGGGTTTCGAGAACTGAAGATGATCAGGAGAGCCTTTTGACTTCAAAGGTGACTGAAGATGGATCTTTGGAGAATGGAGCTGGAGAACCCTGTGGTATTGTTTTGAAAAGGTCAGAATACTATACCATTCCACCCCTGAATGAACTCAACCAGATGGTAGACAGCAATGGAGATGTGTTTGTTGATGACTTCATTGTTGGCCGTACAGGTTATGGCTGTGTCAAGTTCCATGGCAAAACAAATGTTGCTGGACTTAATTTGGATGAGATTGTGTTCTTCAAACGACGTGAGATAGAAGTGTATCCAGATTCATATCCAAGCAAGCCCCCAGTTGGCAAGGATTTAAACAAGAAAGCTGAAATAACTCTGGAGAAAGTTTGGCCCAATGACAAGACCTTGCATAAGCCAATCACAAGCCCTGAGAGGCTTAAGCTTCAAGGATGGCAGAAGAGGGTGGAAGCTGCAACTGCAAAACTTGGAGCCACTTTTCTTGATTATGATCCTGATAACGGAAACTGGGTTTTTACTGTCGATCATTTTACAAGATATGGAATGCATGAATATCTTGACGAGGAACAGTTGGCAAAGAAGTTGAAACGACCACCATTGAAATCAAATCTGCAGGAGGTTGAAAGTTCTGCGGAAAAGGAAAAACTTGAACTCTTGAAGCGACTTCAGGAGAAAAAACAGCAGTTTGAAGCCTACGAGATAGAAAAACGAAGAACGTCTTTGGCTTTAGAAGACCAGGACAGTGATATGGCAGACATTGACCACGAAACATTCCCTGAAGAACTACTCGACGAAAGCGCTGAATTAGGTGGAGGAAGTGACATTGATGAACATGAAATGGACAACTCACCTGCCAGTCACCAGTTGGCAACGGCGCTGGGCATGAATGCGCAACGCATTCAAGTTATGAAGGCCTCATTCTTTGCTGAACAGTCCCATCCGCCAACAGTGCCATTGTCAAGGGATGGTCCGTCTGTTGATAAATCCTTTTTGAGTGGATCCTTCGCGAAAGGAAGTCATGCTAAAAGCTCTGTGTATCCGGGGCTTATGCCTTTGGGTCCTCTGCTGTCTCCCAAGGTGCAGCGTACCATGGATGAATCATCTAGCCAAGGGCAGCTATCACAATCACTGTTTGGCAGTCCTAAGATAGGAGTTTATCCTCTGAGACAACCTTTGGTTCGTGACACAACCCCAACAGCCTCACCCTCCCCAATGCTGCTTCCAAGTGCAATAGGTACCGCGCTGGACGTTGGAATCAAAGTAGTTGGTGCCCGTAATCAATTTGGCTTGGTTCCCAAGGAGGATTCTTTAGTCAACCACAAAGAGAACCTTGTAGGTGATGTCGGCTTGATGATGGGTCGCTCCTTTCGTGTTGGTTGGGGGCCTGGGTTTGTTTTGGTTCATTGTGGTGCACCTCTTGGTTCCCACAAGAAAATATCTGGCAATCCGGCCAGTCAAACCACTCGGATAGGAGGCTTGCTGTCGCCAAGACCAAAACCTAACAGCAGCGCTTCTGCATTCAGCGTGACCGTCGAGAAGCTCCATGTTGCGTCACACTTCAGCCAGGGCAAAGATGTTTTGCTGGCACGTCATCAGTCGGTTTTGGAAACAGAAATCCACCATTCGGAATTATCTATGGAAGACGGCTGTCCATTCTTTCAGCCATCAACAAGTGTTGAAGCCCTGCATAATCATGCTGATGTTGCAAGGAAATACAAGGAAACTACTGTTTCTGAACCACTGAGAAGTGAAGCTGCACAAGCCTGTTTAGTTTGGGATCTTATGGTGTCTCTTTGGGGCAACCTAAGAGAAACACAACAAGATGCAGAAGAACTGCCAAGTACATCAGATGATAGGGAAACTTATGATGTGCGTGTGGAACGAAAAGAAGCCTTATCCGACTGGCTATCGGAAGCTGCAAAGGCAAAGATCTTCCAAGAAGTCGACGCAGCCAATTTCCAGAGCTTTGGATAA

Transcript

amic_s0031.g34.t1

ATACTCAAAAAACTGCTTTATCAAAAGAAAAGCTTGTTATGGTCCATTGCAAATAAGACATCTTCGTCTAAAGTACGATGAAATTTCGTTGACTTCGATCGGATCGAGTATTCCTTCCGGCCAATTGCGAAGAAAGGCTTTCAAGATGTTTAGTTCGAATACACCATTTGGAACTGGCGGAAACTTTGGAACTAGCACAAGCTTCGGGACTGGAACAGCTTTTGGTGCAACTCAGGGTACAGGGACTCAGTTTGGTACAGGTGCTGGTTCCAGTTTATTTGGAAAGACCCAGACAGGCTTTGGTGGTACCTCATTTAATCAGCCACAGAGTTCAGCTTCAACTGGTCTGTTTGGAGCCACATCTACAAACACTGGTGGAAGTTTATTTGGAGGGACACCATCTGGAAGCATCTTTGGACAGCAATCAACTGCACAACCCGCATTTTCAGGTTTTGGGACTGCAACTGGATCAAGCTTATTTGGCAATGCAGGAAAAAGCACAACAGGCACAAGTAATTTTGCAACACCAGGACAAACATCCACCTTTGGATCAACAGCTACAAGTGGATTTGGAACAACTGTAGGCTCCAGTTTATTTGGTGGCAGTGCAAACCCTGCTGGTACCCTCTTTGGAGCAGCAACTCAACCAACCACATCTTTATTTGGACAGAGCAGCACTGTCTCAGGATTTCAAGGATTATCATCTGCTGGTGTGGGAAACACTGGAACACCTATACCTTTTACTGTCGTTACTTCAACTGATGCTATAATGAAAAATGGTGTCACGCAAAATGTCAGCACCAGAAATCAGTGTATCACAGTGATGCAACCATATGAAGGCAAGAGTATAGAGGAATTGAGGATTGAAGATTACGATGCAGGGCGTAAAAGTGGAGCCACTGGTGGGACAGGCTTTCCTGGGCTGTCTACAAGCACAAGTTCTGGTGGTGGTGGTCTTTTTGGAAATACTGGGACATCAGGCTTTGGGTCGTCAGGTTTTGGACAGAAATCTACAACTGGACTTGGCGGAACTAGTGGTACCCTGTTTGGCAACACAGGAACCACATCATTGTTTGGTCAACAGCAGCAGCAGCAACAACAAACAACAGGGTCTTTGTTTGGACAGAAGACAGGGAGTCTGTTCGGCGCATCAACGTCAGGCACAGCAACAACTGGGTTTGGTCAGGGATTTGGTACAGGAAGTAGTTTGTTTGGACAGAGTTCCTCTGGACAGACGACTAGTCTGTTTGGTTCTACAACAACTTCTGCTCCTACTGGGCTGTTTGGCACTCAGGGTACTGGGTTTGGTCAGACGCAAACTGGTACAGGACTGTTTGGACAAACTCCTGGGTTTGGACAAACACAACAACAGTCCTCTCTCTTTGGAGGGAAACCATTTGGAACTACTCTTGGAACTGGAACTGTTGGTGGCATATTTGGAGGACAAAACAAACCTCAAACAGGATTCAGCTTTGGGAATACCACTGGAGGCTTGGGTACAAGTCCATTTAATGCATCCACAAGCACTGCTGGTGGTCTCTTTGGCGCAAAACCAGCTGGGTTTGGTACAGCGACTGCCTTTGGAACTCCAACTGGTACAGGCTTGTTTGGAAACACAGGGACACTTGGCACAACAGCAGTACTTGGCACAGGGACACTAGGAACTGGTACTTTCGGGTCATTGGGCACTCAACAAACAGCTGGTCTTGGGATAGGTGGCCTTGGGAGTAACCAAAACACAGCTGCAGTGAATGCTTTGCAGCAACAATTGCTGGAACAGCAGTTACAATTTCTGGCCAATTCTCCATTTGGTGACTCACCACTGTTTAGAAATTCTCTTGTGGAGAAAGCCAGGGCAGAGAAAGTATCATATACTACTTCCAGCTCCCGTCAAAGAGTTTCAACAACAAATTCTCATTATAAGGTTTGTGCCCGGCCTGCTCCCAGAATTAAACCAAGACCAATAAATAACCACACCATGAATAAGTCCAAACTGTTTGAAGGATTGGAGGAAGATTCAGGTTTGAGTCCAGGCACATTTGTCCCTAGAAAGAACATAAAAAAGCTTGTGATCAAAAGCAAGTCAGTCACAGAGGATTCACCAATCTCAGTCTTTGACACAACGAGAGTCAAGCTTCACGCCTTGGAAGGAGAAGATGATGTTTCAGTGGCAAGCATTGCTCTCCCTCTCTCGCCTCCTTCATCGCAACATACTTCACCGATAATGAGCTCAACTGTTTCTAAGGGTGTGATTTCTAGGGAGGAGCCAGACAGCAGAGCCAATACCAGTGATACCATGAGTCCAATTGGAGTCAAATTCTCCCAAGGTGGAGTGAAATCATCCTTAGACACAACAATTGCTGACTTAAATGTTCGGCGGGTTTCGAGAACTGAAGATGATCAGGAGAGCCTTTTGACTTCAAAGGTGACTGAAGATGGATCTTTGGAGAATGGAGCTGGAGAACCCTGTGGTATTGTTTTGAAAAGGTCAGAATACTATACCATTCCACCCCTGAATGAACTCAACCAGATGGTAGACAGCAATGGAGATGTGTTTGTTGATGACTTCATTGTTGGCCGTACAGGTTATGGCTGTGTCAAGTTCCATGGCAAAACAAATGTTGCTGGACTTAATTTGGATGAGATTGTGTTCTTCAAACGACGTGAGATAGAAGTGTATCCAGATTCATATCCAAGCAAGCCCCCAGTTGGCAAGGATTTAAACAAGAAAGCTGAAATAACTCTGGAGAAAGTTTGGCCCAATGACAAGACCTTGCATAAGCCAATCACAAGCCCTGAGAGGCTTAAGCTTCAAGGATGGCAGAAGAGGGTGGAAGCTGCAACTGCAAAACTTGGAGCCACTTTTCTTGATTATGATCCTGATAACGGAAACTGGGTTTTTACTGTCGATCATTTTACAAGATATGGAATGCATGAATATCTTGACGAGGAACAGTTGGCAAAGAAGTTGAAACGACCACCATTGAAATCAAATCTGCAGGAGGTTGAAAGTTCTGCGGAAAAGGAAAAACTTGAACTCTTGAAGCGACTTCAGGAGAAAAAACAGCAGTTTGAAGCCTACGAGATAGAAAAACGAAGAACGTCTTTGGCTTTAGAAGACCAGGACAGTGATATGGCAGACATTGACCACGAAACATTCCCTGAAGAACTACTCGACGAAAGCGCTGAATTAGGTGGAGGAAGTGACATTGATGAACATGAAATGGACAACTCACCTGCCAGTCACCAGTTGGCAACGGCGCTGGGCATGAATGCGCAACGCATTCAAGTTATGAAGGCCTCATTCTTTGCTGAACAGTCCCATCCGCCAACAGTGCCATTGTCAAGGGATGGTCCGTCTGTTGATAAATCCTTTTTGAGTGGATCCTTCGCGAAAGGAAGTCATGCTAAAAGCTCTGTGTATCCGGGGCTTATGCCTTTGGGTCCTCTGCTGTCTCCCAAGGTGCAGCGTACCATGGATGAATCATCTAGCCAAGGGCAGCTATCACAATCACTGTTTGGCAGTCCTAAGATAGGAGTTTATCCTCTGAGACAACCTTTGGTTCGTGACACAACCCCAACAGCCTCACCCTCCCCAATGCTGCTTCCAAGTGCAATAGGTACCGCGCTGGACGTTGGAATCAAAGTAGTTGGTGCCCGTAATCAATTTGGCTTGGTTCCCAAGGAGGATTCTTTAGTCAACCACAAAGAGAACCTTGTAGGTGATGTCGGCTTGATGATGGGTCGCTCCTTTCGTGTTGGTTGGGGGCCTGGGTTTGTTTTGGTTCATTGTGGTGCACCTCTTGGTTCCCACAAGAAAATATCTGGCAATCCGGCCAGTCAAACCACTCGGATAGGAGGCTTGCTGTCGCCAAGACCAAAACCTAACAGCAGCGCTTCTGCATTCAGCGTGACCGTCGAGAAGCTCCATGTTGCGTCACACTTCAGCCAGGGCAAAGATGTTTTGCTGGCACGTCATCAGTCGGTTTTGGAAACAGAAATCCACCATTCGGAATTATCTATGGAAGACGGCTGTCCATTCTTTCAGCCATCAACAAGTGTTGAAGCCCTGCATAATCATGCTGATGTTGCAAGGAAATACAAGGAAACTACTGTTTCTGAACCACTGAGAAGTGAAGCTGCACAAGCCTGTTTAGTTTGGGATCTTATGGTGTCTCTTTGGGGCAACCTAAGAGAAACACAACAAGATGCAGAAGAACTGCCAAGTACATCAGATGATAGGGAAACTTATGATGTGCGTGTGGAACGAAAAGAAGCCTTATCCGACTGGCTATCGGAAGCTGCAAAGGCAAAGATCTTCCAAGAAGTCGACGCAGCCAATTTCCAGAGCTTTGGATAATTTTTTCATTATTTTGGCAATTAATGATGAGCAAATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49793	Nuclear pore complex protein Nup98-Nup96 OS=Rattus norvegicus OX=10116 GN=Nup98 PE=1 SV=2
Q6PFD9	Nuclear pore complex protein Nup98-Nup96 OS=Mus musculus OX=10090 GN=Nup98 PE=1 SV=2
P52948	Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens OX=9606 GN=NUP98 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002191 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04096 all species →	Nucleoporin2	Nucleoporin autopeptidase	Family	Interproscan
PF21240 all species →	Nup98_GLEBS	Nup98, Gle2-binding sequence	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007230 all species →	Domain	Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain	Interproscan
IPR037665 all species →	Family	Nucleoporin peptidase S59-like	Interproscan
IPR036903 all species →	Homologous_superfamily	Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23198 all species →	NUCLEOPORIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0000973 all species →	Biological Process	post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006405 all species →	Biological Process	RNA export from nucleus	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0034398 all species →	Biological Process	telomere tethering at nuclear periphery	Interproscan
GO:0044614 all species →	Cellular Component	nuclear pore cytoplasmic filaments	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14297	NUP98, ADAR2, NUP116; nuclear pore complex protein Nup98-Nup96	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.