Gene detail

Detailed information of amic_s0031.g46.t1 in Acropora microphthalma

Genomic Location: sc0000031_pilon:765523...784521
NR annotation: XP_044176468.1, uncharacterized protein LOC114974647 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0031.g46.t1

atggcatctaatgtgtgcccgcctaaacattatccagttcatggctccagcaaactccaagtcaccattttggcgtctgagtggggatccagtaaaggagggctctccaccataaacagagaattggccattcaattagccaaattttcttgtgttgaagttaccttctttttgcctaaatgctctgacaaagacaagaaagcagctgctagccactgtgtttccattgttgaggcagcaagacgacctggttacaatgaactggactggctcagctttccaccagggcatttgacaatagatgtgattgttggtcatggagctaaacttggtcaccaagcccaagtcatccgtgactctcacaactgcaagtgggttcaagttgtacacactgacccagaggaactaggaatgttcaaatgttatgagaatccaatctcagcaggagaagaaaagcatcatattgaggtagagctatgccacatggctgattttgtggtaggagttggacccaagctggtgaaagcctttcgcaagtaccttgccttttgtaaaaagcaccaagatctttttgagtttactcctggtgtttttgatgaattttccagtgttcagcaagttcctgacgaaagagaacagtgcagtgttttggtgtttggccgtggagatgatgaagattttaagttaaagggatttgacattgcagcaagatctgttgctgccttgtctgacacttgcctttattttgtgggagtacctgatggaaaacatgaggagattgccaagtggtttgttgatttgggcattcctgcaaaccgtctcaaggtgagaggctacgtggatagccgagaagaactaaagcggttattttgtgaggtggatcttgtactgatgccatcaaggacagaaggatttgggttgacaggtctggagggtctgtctgctggccttcctgtacttgttagcaaaaactccggttttggagaagctcttggcagcataccatgtggctcttcatttgtcattgactctgaagaccccagcaagtggacagcaagcatcgaaggcatctggaacagagatagaaagtcacaacttgatgaggtcaaggctgtgcaacatttttatagtgaaagatacagctggtctgaacagtgccaacatcttattgaaaagatgtttaaacttggtgatggaacttcctctgagactgagatcacagcacaggcagtcggagcaagaaagcggaaactgaaagaggacttcacagctcgtgcttcgtttccaagtcatgtcatagaggggatacaacaagtttaccagaagtgtgaaggggtgattttgccaattccttggtgcgacaaatttaattttcagatagacgacattttcaccagacttaggattttggaaaaagaaaagacgcgcggaacagcgaccactaaagaagtcaccagcatgacaagtatcttctcaccgcatgaacattgcaagcaaccccagattgtgttgattgaaggcgaacctgATCTGGAAAACATAGGGGTCAGTGGAAGTACGCTGTATTTTCATGCATATGTAGATGTCCCCTTGAAAGATGACAAGAAACTTCAGTTTACAAGCCCTGATAGGATACAAGCAGTGGAAAAATTTTGTAAAAGCAAGAAGAACTCTTGGGAATCTCTCTCTGCTGTACAAAAACAAATTATTGCCAAACACATTATAGTTAATGATGAACACAGGTTCCTGTTTTGCTTTGTGCCTAAAGTTGCATGTTCTAATTGGAAGAGAGTCTTAATGGTCCTTGAGGGTGCAGATACTGACAGCAATAATATAGGAAACCTCAATCACTCAGATTTTACATTTCTGGCAGACTTAACCCCTCTAGCTATCAAGCACCGTCTAAAGGAATACTATAAATTCATGTTTGTACGAGAACCTCTGGAAAGGTTAACATCAGCTTACAAGGACAAGTTTGTGCTAAACAATACTTCTTTCCATAAAAGCTATGGCAGAAAGATTGTCAAGAAATTGAGAAAAAATCCTCCAATAGGTCTCAAAGGAGATGATGTGACAATATCAGAGTTTTTTCAGTACATTTCAGAAAGTCGCATGGAAGAGATGAATGAACATTGGATGCCATACCACATGTTATGCCAACCGTGTGCTGTTTCTTATGATTTTATTGGTTCTTTTGAAAATCTTGAGTCTGATGCTACTCAAGTACTTAAACACCTGAATATTGACGAACAAGTTTCTTTTCCAAAACAACAAGCGTGGTACAAGGCTGGAGGGAAGGGATTTGTAATTGATGCACCCAAGTATACAAATGTTCCCAAAAAACTGTTGAAAAAAATAATTGATAAATATTCCAATGACTATACAATCTTCTCATACTCTACACCAAGTGTTGAAATTGGTTGA

Transcript

amic_s0031.g46.t1

CGTTTCACTCATCCACCGCAGTCAAGTTCTCTTCAACATTGGATCAATTGTTGAGACTTTTTTCGTCAAGGAACGACACCACAgattttagcacattggttggatacaccattcctaattgacttggttcttgatggcatctaatgtgtgcccgcctaaacattatccagttcatggctccagcaaactccaagtcaccattttggcgtctgagtggggatccagtaaaggagggctctccaccataaacagagaattggccattcaattagccaaattttcttgtgttgaagttaccttctttttgcctaaatgctctgacaaagacaagaaagcagctgctagccactgtgtttccattgttgaggcagcaagacgacctggttacaatgaactggactggctcagctttccaccagggcatttgacaatagatgtgattgttggtcatggagctaaacttggtcaccaagcccaagtcatccgtgactctcacaactgcaagtgggttcaagttgtacacactgacccagaggaactaggaatgttcaaatgttatgagaatccaatctcagcaggagaagaaaagcatcatattgaggtagagctatgccacatggctgattttgtggtaggagttggacccaagctggtgaaagcctttcgcaagtaccttgccttttgtaaaaagcaccaagatctttttgagtttactcctggtgtttttgatgaattttccagtgttcagcaagttcctgacgaaagagaacagtgcagtgttttggtgtttggccgtggagatgatgaagattttaagttaaagggatttgacattgcagcaagatctgttgctgccttgtctgacacttgcctttattttgtgggagtacctgatggaaaacatgaggagattgccaagtggtttgttgatttgggcattcctgcaaaccgtctcaaggtgagaggctacgtggatagccgagaagaactaaagcggttattttgtgaggtggatcttgtactgatgccatcaaggacagaaggatttgggttgacaggtctggagggtctgtctgctggccttcctgtacttgttagcaaaaactccggttttggagaagctcttggcagcataccatgtggctcttcatttgtcattgactctgaagaccccagcaagtggacagcaagcatcgaaggcatctggaacagagatagaaagtcacaacttgatgaggtcaaggctgtgcaacatttttatagtgaaagatacagctggtctgaacagtgccaacatcttattgaaaagatgtttaaacttggtgatggaacttcctctgagactgagatcacagcacaggcagtcggagcaagaaagcggaaactgaaagaggacttcacagctcgtgcttcgtttccaagtcatgtcatagaggggatacaacaagtttaccagaagtgtgaaggggtgattttgccaattccttggtgcgacaaatttaattttcagatagacgacattttcaccagacttaggattttggaaaaagaaaagacgcgcggaacagcgaccactaaagaagtcaccagcatgacaagtatcttctcaccgcatgaacattgcaagcaaccccagattgtgttgattgaaggcgaacctgATCTGGAAAACATAGGGGTCAGTGGAAGTACGCTGTATTTTCATGCATATGTAGATGTCCCCTTGAAAGATGACAAGAAACTTCAGTTTACAAGCCCTGATAGGATACAAGCAGTGGAAAAATTTTGTAAAAGCAAGAAGAACTCTTGGGAATCTCTCTCTGCTGTACAAAAACAAATTATTGCCAAACACATTATAGTTAATGATGAACACAGGTTCCTGTTTTGCTTTGTGCCTAAAGTTGCATGTTCTAATTGGAAGAGAGTCTTAATGGTCCTTGAGGGTGCAGATACTGACAGCAATAATATAGGAAACCTCAATCACTCAGATTTTACATTTCTGGCAGACTTAACCCCTCTAGCTATCAAGCACCGTCTAAAGGAATACTATAAATTCATGTTTGTACGAGAACCTCTGGAAAGGTTAACATCAGCTTACAAGGACAAGTTTGTGCTAAACAATACTTCTTTCCATAAAAGCTATGGCAGAAAGATTGTCAAGAAATTGAGAAAAAATCCTCCAATAGGTCTCAAAGGAGATGATGTGACAATATCAGAGTTTTTTCAGTACATTTCAGAAAGTCGCATGGAAGAGATGAATGAACATTGGATGCCATACCACATGTTATGCCAACCGTGTGCTGTTTCTTATGATTTTATTGGTTCTTTTGAAAATCTTGAGTCTGATGCTACTCAAGTACTTAAACACCTGAATATTGACGAACAAGTTTCTTTTCCAAAACAACAAGCGTGGTACAAGGCTGGAGGGAAGGGATTTGTAATTGATGCACCCAAGTATACAAATGTTCCCAAAAAACTGTTGAAAAAAATAATTGATAAATATTCCAATGACTATACAATCTTCTCATACTCTACACCAAGTGTTGAAATTGGTTGAAAGAAATAGAAAATTCAAAATGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q805E5	Carbohydrate sulfotransferase 14 OS=Danio rerio OX=7955 GN=chst14 PE=2 SV=1
Q80V53	Carbohydrate sulfotransferase 14 OS=Mus musculus OX=10090 GN=Chst14 PE=2 SV=2
Q8NCH0	Carbohydrate sulfotransferase 14 OS=Homo sapiens OX=9606 GN=CHST14 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000025 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03567 all species →	Sulfotransfer_2	Sulfotransferase family	Domain	Interproscan
PF20706 all species →	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005331 all species →	Family	Sulfotransferase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR018011 all species →	Family	Carbohydrate sulfotransferase 8-10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12137 all species →	CARBOHYDRATE SULFOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008146 all species →	Molecular Function	sulfotransferase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016051 all species →	Biological Process	carbohydrate biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0031.g46.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.