Gene detail

Detailed information of amic_s0031.g5.t2 in Acropora microphthalma

Genomic Location: sc0000031_pilon:38986...52430
NR annotation: XP_044164009.1, ras guanyl-releasing protein 3-like isoform X2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0031.g5.t2

TGATTAACTTTGATTTGACCGGCTTATTTCAGTTCCTGAAGATTCTTATGGAGTTTTTATCTTCTGATGGGAATTATGCTATGTACAGGAAAGCTTTGGGTGATGCCACCGGATTTCTCATCCCAATTTTGTATTCAGCTGAAGGATCTTATTGCATTGCACACTGCACTCCCTGACTCTGTTGATGGAAACCTCATCAATGTACAAAAGATGATCCGCTTAGCAACAATTGTTGCCCCTCTACTGCAGGTGCACACTTCCCAGCCACCTGTGAATCCAAATATGGAGCTTATCAAAGTGTTACGAGTGACACTTCAGACCAGACTCACAGATGAGGAGTTGTATGAACTGTCACTGGCCCGAGAACCAAGGAGTCATAGTCCATCTATGTCTTCAAGTTTGTCAAGTGATCACAGTGTGATGTTTGCAGACTGGGCAGCGGGATTACTACAACACACAACAAGTGACCCCCTGACGTCCGAGCGACATGTCTCCTCCATGGTTGAGGCTGTTTTCAAGATATATGACACAAATAAAGATGGCTCAATATCGGGGGAAGAGTTTGATGCAATTGCCACGAATTTTCCATTTATCGATTCGTTTGGAGTTCTTGACGTAAACAGTGATGGAGTCATCAGCCGAGAGGAAATGAGGAACTACTTTATGAAAGCAAACTGTCAAGAATTAACCAAAGGCTTTTCACATAATTTTCAAGAGTTCACTTACTTCACGCCGACATTCTGCGACCACTGCGGTGGAATGCTCTGGGGGATCATTAAACAAGGACACAGGTGCAAAGATTGTCATATCAACTGTCATAAAAACTGCAAAGCAGAGGTTGTAATCGGGTGCCGACGGAAACAACCCGAAAACGGCTCAGATAAAACACTTCAAAAATCAGAGATGGTCAGAAGCAAAGGGAAATATAAGAGCTTGAAAAAATTTCATAAACATCATTCAGAAGAAACGCTGAAGGCTGTTAATGGCGAATCTATCAACGTACCATTGGATCAATACAGGAGGCTTGTTAAAGCACAGGAGTGTAACGAAGCCCTCTTGTTGGAGAACGAACGTCTTCACAGCGAATTGAAAGAGGCTACGCAAAAGTTGAGCGTGTTGCAGAATCAAGTGAATGCTATGAAGCAAAATACTGTGACATTTATTCTGGAACAAATGGACACGCTTAAAATGCAGAAAGTAACAGAGGTATAGCGCGTGTTGACCTTGTATCGGACGATACGAAGGCAAATCAACGAAGCGGAACAAAACGCTGAGAGGAAACACGACGCGTCTGCGAAGTAATGGACTAGAATTAAGCGTGGAGTGACTTGACGAAAATCAAGTTTAGATTAACACAACTGTGTTCCTTTAAAACTTGCTTCTCCTCGCTTAGACGAAGACGCGCTTGTGTGCTGCTTAGAGACAGGACCTGCTCAAGGGATAATTCTCGCGTACAGCTCCATGCTCTCACACTTTTTCCGTCCATCACATCTTCCTGTGAGGTATCCTCAACTCTGCGTAGCCACAAGAATGGGATTTTTTAAACCGTGATTTTTTTAAAAATTAACCCAACCCAACCCTACTCTAACCCTTAATTCGACCCTTTTAAACCAAGTAGTATTTAGAGAAGTTCCAAAGAAGTGGCAAAAGCGGCTTAGCAACTAGTTTAGTCTTAGTCGCACACGCTAGTTAATTGGTTTATATTGCGTCACATTGTTCAAGCAATAAGAGATTAATTCAAATACGAAATGATTTGTATTATGTGTTTTCCCGCGCTTTTCCCAGGCTCCAAGAGTTATTATTTTTTCAGGTTTGGTTAATATGCTAATGTCACATCTCAGGGAAGCAATCACGCTTTTCCAACTGCTTTTTTATCAAACACTAGAACAGGTCCCCCAGCAAAATTAAGTCTTTCTTTTAACAGTTTTCTTAATCTGGTATCAAATAGTATACATAAGTTTTTGAAACCATATCATCTTGAATATTAAGGTttgtcttttcttgttcttgtagtttctttctttCCCATTCGGAACCATATCTTGTAAGCCTTGACATGAATATAATCGTTCGTCAAATAAGAAGTGTTTGGTGGATGATCCTCGCTAAAATAAATGGGAATTGTTTTGCTTCAAGAAATAGAATGTCTTTTTTTTTGTTGTTCTTCAGAATATTTAAAAGGTGTAAAGATAGGTATTGTTATGTATAATTTATTACTATATTCAATAAACATGAAATTTTAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IJ06	RAS guanyl-releasing protein 1 OS=Xenopus tropicalis OX=8364 GN=rasgrp1 PE=2 SV=1
Q6NTL4	RAS guanyl-releasing protein 1 OS=Xenopus laevis OX=8355 GN=rasgrp1 PE=2 SV=1
Q8IV61	Ras guanyl-releasing protein 3 OS=Homo sapiens OX=9606 GN=RASGRP3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002626 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR020454 all species →	Domain	Diacylglycerol/phorbol-ester binding	Interproscan
IPR036964 all species →	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan
IPR023578 all species →	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22968 all species →	PROTEIN KINASE C, MU	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0089700 all species →	Biological Process	obsolete protein kinase D signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0031.g5.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.