Detailed information of amic_s0032.g12.t1 in Acropora microphthalma

Genomic Location: sc0000032_pilon:159137...190165
NR annotation: XP_029188557.2, VPS10 domain-containing receptor SorCS1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q98930Sortilin-related receptor (Fragment) OS=Gallus gallus OX=9031 GN=SORL1 PE=2 SV=1
Q95209Sortilin-related receptor OS=Oryctolagus cuniculus OX=9986 GN=SORL1 PE=1 SV=1
Q92673Sortilin-related receptor OS=Homo sapiens OX=9606 GN=SORL1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000636 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18911
all species →		PKD_4PKD domainDomainInterproscan
PF15902
all species →		Sortilin-Vps10Sortilin, neurotensin receptor 3,RepeatInterproscan
PF15901
all species →		Sortilin_CSortilin, neurotensin receptor 3, C-terminalDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050310
all species →		FamilyVPS10-related sortilin family receptorsInterproscan
IPR031778
all species →		DomainSortilin, N-terminalInterproscan
IPR035986
all species →		Homologous_superfamilyPKD domain superfamilyInterproscan
IPR000601
all species →		DomainPKD domainInterproscan
IPR022409
all species →		DomainPKD/Chitinase domainInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR006581
all species →		DomainVPS10Interproscan
IPR031777
all species →		DomainSortilin, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12106
all species →		SORTILIN RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005794
all species →		Cellular ComponentGolgi apparatusInterproscan
GO:0006892
all species →		Biological Processpost-Golgi vesicle-mediated transportInterproscan
GO:0016021
all species →		Cellular ComponentmembraneInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0032.g12.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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