Gene detail

Detailed information of amic_s0032.g36.t1 in Acropora microphthalma

Genomic Location: sc0000032_pilon:566539...572560
NR annotation: XP_015770305.1, PREDICTED: uncharacterized protein K02A2.6-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0032.g36.t1

ATGTCGAATTCGTCGGAAAGAGCGCTGCCTTCAATGGATTTGTCTGGTTCAGCTTCGAAAGTCGCGGAAAGGTGGAGGCAATGGAAGAGATCGTATGAATATTACATCGACGGAAAGGGAATTACACAAGCCGGGAGGAAGAGGTCGCAATTGCTTCACTTGGCAGGTCTAGAAGTACAAGATATCTTCGAAGATTTGGTAGACCCGGGACCCGTTAACGCAACTACGGACGACGTGTATAAAGTTTGTATTCGAAAATTAGATGCTCATTTTCGTGCTGATGATAATGTACCGTACGAGCGACACATGTTTCGTCACATGGCGCCACTGTCAGGAGAATCCGCCGACAAGTTCCTGGTCCGTTTAAAAAAACAGGCAAGACATTGTAATTTTGGTGAGGCTTTAGACGATAATCTGAGGGATCAGTTAATCGAAAAGTTGTCCGATATCGAGTGGAAGAAGAAACTGCTAGAGGTGAGAAATATTTCGCTTGAAGATGCAATGGATAAAATTCGGCTGTGGGAACAAGCACGTGATCAAGTTACTGAAATGACAAGAACCGATGAATCTACTAATGCTGTGGTAGTCAAGAAGGCATATGGCAAAACTTGTTTCAGTTGTGGAAAGGAGGGCCACTTCTCTCGTGATAGGAATTGTCCTGCGAAGGGAAGAAAGTGTTCAAAATGTGGAAAATATGGCCATTTCGCTCGCTGTTGCAAGAGTGGATTTAAGCAGCATTCTGCCCAGGCAAACCCTTCGAAACAGCCTCCTGTTCATCGCCGTGGTCCTAGACAGCTGTTTCATGGAAAGGGAAGAGAAGCCAACCTTGTTGATGAAGTTACACAGTCGAGTGAAGATAATTCATTTGCTTTTACTATAGAAGAACAGACATGTGCCCTATCAAATGTAAGTGAACCAGTTGTTGCTGTGAAGATTGGTGGAATTAGAAAAGAAGTATTAGTTGACTCTGGCTCTGCAAGTAATCTGATTAGCCGGGATGAGTTAAAAAGCCTGCAAAGTCAAGGATTGAAGATTGAATTGCAATCATGCAGCAAGAAATTATATGCCTATGGTGGCCAAAAGCTTGAGGTTGTGGGTCAGTTTAAGTCAGAATTGGCTGTGGAAGAGACAAAGGTCTTAGCACATTTTATTGTGGTCAATCGAGGGCGGTGCCTGGTCGGATATTCAACGGCAACAGAACTGGGAATTCTCCACGTGGGTTTAGATGATGAGGAAGCAGACATAAGTGACCAAGGGGCCAGAGACCGTGACACCCAAAAGAAGCAAGCAAACAAGGATTATGTTGACAAAAAGTTCCATGCAAAAGAGCGAGACGTGCAAATGGGAGACTTGGTTCTGTTGGAGCAGAAGAGACAAAACAAGTTATCGTCGTCATATGAGAAGGAGCCATATGAGGTGATGACCCGGTACGGGGATCAAGTTGTGTTGAGGTCGTCGAACGGAGGGGAGTACAGGAGAAATATGCAGCACATTAAACCCTTCAATATTGCAGATCATGAAAGGGCGGCGTCACAGTCAGAGCTCGGATCTGCATCTGCAACAGCTGCGTCTGCGTCAGCTACACAAGTTATGGCACCGGTGACACCTATTACAGCACCAGCACCAGCAGAGGTTCCAAGGATGTCTTTACCACCAGCAGCAGCGGAAATACCCCCCGAGGTGCCAGTTTCAGATAACTATTTTGGTGCGCCCAAGAACTGGAAGCTTGGAGCAAACTGCAAAGGAAAACGAAACCGGACCATCTTCACGGCCAGTCAGCTGGAAAGACTCGAAAAAGAATTCCATTGCCAACAATACATTGTGGGGTCGCAAAGGTTTTACCTCGCGCACGATCTGGGCCTGAATGAAACACAAGTAAAAGTTTGGTTCCAAAACCGAAGAATCAAATGGAGGCGACAGTATTTGGAATCTGCCACCGCAAGTTTAAGGCAGGCAAAAATTGAGCAGGATGCTGATGAAGAAGGCTGTCGGAAACTGGACACGAGCACATGA

Transcript

amic_s0032.g36.t1

GTGTAACGTGGTTCCGAGCACATGTAGTACTCTACAAATTGGCGACGAGGATGTCGAATTCGTCGGAAAGAGCGCTGCCTTCAATGGATTTGTCTGGTTCAGCTTCGAAAGTCGCGGAAAGGTGGAGGCAATGGAAGAGATCGTATGAATATTACATCGACGGAAAGGGAATTACACAAGCCGGGAGGAAGAGGTCGCAATTGCTTCACTTGGCAGGTCTAGAAGTACAAGATATCTTCGAAGATTTGGTAGACCCGGGACCCGTTAACGCAACTACGGACGACGTGTATAAAGTTTGTATTCGAAAATTAGATGCTCATTTTCGTGCTGATGATAATGTACCGTACGAGCGACACATGTTTCGTCACATGGCGCCACTGTCAGGAGAATCCGCCGACAAGTTCCTGGTCCGTTTAAAAAAACAGGCAAGACATTGTAATTTTGGTGAGGCTTTAGACGATAATCTGAGGGATCAGTTAATCGAAAAGTTGTCCGATATCGAGTGGAAGAAGAAACTGCTAGAGGTGAGAAATATTTCGCTTGAAGATGCAATGGATAAAATTCGGCTGTGGGAACAAGCACGTGATCAAGTTACTGAAATGACAAGAACCGATGAATCTACTAATGCTGTGGTAGTCAAGAAGGCATATGGCAAAACTTGTTTCAGTTGTGGAAAGGAGGGCCACTTCTCTCGTGATAGGAATTGTCCTGCGAAGGGAAGAAAGTGTTCAAAATGTGGAAAATATGGCCATTTCGCTCGCTGTTGCAAGAGTGGATTTAAGCAGCATTCTGCCCAGGCAAACCCTTCGAAACAGCCTCCTGTTCATCGCCGTGGTCCTAGACAGCTGTTTCATGGAAAGGGAAGAGAAGCCAACCTTGTTGATGAAGTTACACAGTCGAGTGAAGATAATTCATTTGCTTTTACTATAGAAGAACAGACATGTGCCCTATCAAATGTAAGTGAACCAGTTGTTGCTGTGAAGATTGGTGGAATTAGAAAAGAAGTATTAGTTGACTCTGGCTCTGCAAGTAATCTGATTAGCCGGGATGAGTTAAAAAGCCTGCAAAGTCAAGGATTGAAGATTGAATTGCAATCATGCAGCAAGAAATTATATGCCTATGGTGGCCAAAAGCTTGAGGTTGTGGGTCAGTTTAAGTCAGAATTGGCTGTGGAAGAGACAAAGGTCTTAGCACATTTTATTGTGGTCAATCGAGGGCGGTGCCTGGTCGGATATTCAACGGCAACAGAACTGGGAATTCTCCACGTGGGTTTAGATGATGAGGAAGCAGACATAAGTGACCAAGGGGCCAGAGACCGTGACACCCAAAAGAAGCAAGCAAACAAGGATTATGTTGACAAAAAGTTCCATGCAAAAGAGCGAGACGTGCAAATGGGAGACTTGGTTCTGTTGGAGCAGAAGAGACAAAACAAGTTATCGTCGTCATATGAGAAGGAGCCATATGAGGTGATGACCCGGTACGGGGATCAAGTTGTGTTGAGGTCGTCGAACGGAGGGGAGTACAGGAGAAATATGCAGCACATTAAACCCTTCAATATTGCAGATCATGAAAGGGCGGCGTCACAGTCAGAGCTCGGATCTGCATCTGCAACAGCTGCGTCTGCGTCAGCTACACAAGTTATGGCACCGGTGACACCTATTACAGCACCAGCACCAGCAGAGGTTCCAAGGATGTCTTTACCACCAGCAGCAGCGGAAATACCCCCCGAGGTGCCAGTTTCAGATAACTATTTTGGTGCGCCCAAGAACTGGAAGCTTGGAGCAAACTGCAAAGGAAAACGAAACCGGACCATCTTCACGGCCAGTCAGCTGGAAAGACTCGAAAAAGAATTCCATTGCCAACAATACATTGTGGGGTCGCAAAGGTTTTACCTCGCGCACGATCTGGGCCTGAATGAAACACAAGTAAAAGTTTGGTTCCAAAACCGAAGAATCAAATGGAGGCGACAGTATTTGGAATCTGCCACCGCAAGTTTAAGGCAGGCAAAAATTGAGCAGGATGCTGATGAAGAAGGCTGTCGGAAACTGGACACGAGCACATGACTTCTAACTGGCCCCGTCCTCCCGAGATCCTCTCTTTTTTCTAGTTTAATAGATTTCTGAGAATTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91770	Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 SV=1
Q06615	Homeobox protein notochord OS=Xenopus laevis OX=8355 GN=noto PE=2 SV=1
P10178	Homeobox protein HB3 (Fragment) OS=Tripneustes gratilla OX=7673 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000003 (this species only)
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR050877 all species →	Family	EMX/VAX/Noto Homeobox Transcription Factors	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR001969 all species →	Active_site	Aspartic peptidase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24339 all species →	HOMEOBOX PROTEIN EMX-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007417 all species →	Biological Process	central nervous system development	Interproscan
GO:0007420 all species →	Biological Process	brain development	Interproscan
GO:0030182 all species →	Biological Process	neuron differentiation	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0032.g36.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.