Gene detail

Detailed information of amic_s0032.g37.t1 in Acropora microphthalma

Genomic Location: sc0000032_pilon:575467...592360
NR annotation: XP_029195489.2, myo-inositol 2-dehydrogenase-like isoform X2 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0032.g37.t1

ctttgtttgtccccccaaattttgcataagcactgcttttgttttctcttgggaccattgtaagtctcaagagaaactggaaacaatgcttatgcaaaatttggggggacaaacaaagagtattatggcatGGCCTATTTTCTTGCAATTACAATGCTATGAAATTTTCAACTGAAGTTTCTAGGTAACGGTATTCACTGAAACCAGTGGGTCCTTTCCTCCTGGTTTAGGGGCAGAGCCGAGATGTAAATCTACGCGTGCGAAGCGAATGGGCGGGGGCGTGGAGCGAGAATTCTGCGTCTTGAGTTGTAACGCCCGTTTACGGTCGTGGTGGGCACTCAGTCTCGTTAGCTATGAAAGGTAAAAATTCAGAAGCAAGACATCAATCGTTCGTTTGCTGACCTTGAATCCAGTCCAATTTTTCTGAAATTCCACTTCTGAACTCTCTCGCCGTTCTGACGTACGCGTGCATCGTGGATCGATTGTTTCGAACAGGGTTATAATGAACTCCAAATCGCCCGTAGGATTTGTGTTATTTGGTATGGGTCGTATTGGGCATACCCATGCAAACAGCCTGATAAGAGAGCCTCTAGCACAGCTGAAATACATAGTGGATGTTGAAGTGGACAAAGTTAGAGAATTTGTGGCCTCAAACTTTCTTGACACCAAGATTGTGCCTCCCTCCGAGCTGGAGACTGTATTGGCTGATTCAAGTGTGGATGCTGCAGTAGTTTGCACTCCCACCGATTTTCATGAGGATCTGGTTGTGAGGTGTTTAAAGGCAGGGAAAGCTGTGTTTTGTGAGAAGCCAATAGCAAAGAGCTTAGAGGCTATTGAGCGGTGTTACAACATTGCTTTGACCAAGAACATCCCATTATTTTGTGGCTTCAATCGCCGTTTTGATCCAACAATATCTTCAGTAGCTGCCAGAGTGAAAAATGGAGACATTGGACAAGTCCAAATTGTAAAGACGACAAGTCGAGACTTTCCAATGCCACCCATTAGTTATTTGAAGATTTCTGGAGGAATGTTTCACGATTGCTGTGTGCATGATGTAGATGCAATATGCTGGTTACTGGGAGAAACACCCCATACAGTGTTCTGTTTTGCCCATGCATTCCATCCAGAGATAGAGGAGATAAAAGATGTAGATACAATCATAGTTGTCATGAAATTCCCCAGTGGTGCCATGGGTCAGATAGATTTGTCCCGTCATGCTGTCTATGGTTATGACCAACGAATTGAGGTTTTTGGGGGAGGTGGTATGTTAACCAGTGACAACGTCCCTGCTTTCAACTCCCAGATGTTTAACACTGGAGGCAAGTTGCAAGTTTCTCTAAAGCATTCCTTCTGTGAGAGATATGCTGACAGCTACGTTTTGGAAATGAACCATTTTATCAACGTCATTAGGAACAAGGAAAGTTTGCTTGTCTCCAAAGATGATGTGATTCGATCGTGGAATGTTGTTGGTGCCATAGAGAAATCTTTCCAAAGTGGAAAACCAGTGACTTTACCTTAGATTGTGGTAGAACTGGGTAATCTTGTTTGAAAGGTGGACAGCATTACCTGTtggataaataaccatccagtggataagcacaaccaaaagcaataaattacactgttggttagttatttatccaattgataCTGAGCCAGCTTGTTCTTGATCCCAGAAATTGAAGTATCACTCCACAGACTGACCCCACCCCAGTCACCCCCCTCCCCTTTATTTTATGTGTGAGTGTGTTTGTGTAGTTTCTGGTGGGGGCATTTGATAATTCATTGATTTAAAGTTTTTTTCTATGTTCCCTGCAAAATAGAAGTTACCAGAACACTGACCATAGAAAGCTGTGTTATTTTACTTCTTTGAGGTATCAATGTCCTAGGATGTGTAGATTTACCCTACTGTTATATGCACTCTGAAGTGAACTTCGAATGCATACTTTATCTAATGTAGGGCAATGCAGGTGTTCTCACTAATATGTGATGAGACCTGTGTCTCACAGCCAAATCATGTGAGCATGatacaccaaatgcataaatgggggcttaattctttttctttatataaaaattatgccaattagactgactagctgtatttttgtgtgaaaattcttttgaattttccgcatgctggcaaggcttgtgaggttaattggcacaaagataatagaataattaattattagtatcacccaactagtagactaatgcaaatcctgcattttgattggctctgctaccataggtctattttggtaatagtgatcgagtagccaagttcgctttttgtaaagctatttatttcgttttattcccaaaataaatttttatttttgctgaatttattattgtttttttctgtctgactagtccaattagaccctccgccctcaagggccacggattaatagcccattcggcttcgcctcatgggctattgccccgtagcccttacgggccacaggtctaattgttaattaGCAGTCATGTATTCGGTGTATAACATAAGCCAATATAACTTGAGATGTTACTATCACTAAAGATACATTGAAAGTTATGTTTGATGTGCAAAATGACTTATTTGTAGTTAATTAAAAGGTTAGTAAATTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WYP5	Myo-inositol 2-dehydrogenase OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=iolG PE=1 SV=1
O05389	Uncharacterized oxidoreductase YrbE OS=Bacillus subtilis (strain 168) OX=224308 GN=yrbE PE=3 SV=2
O68965	Inositol 2-dehydrogenase OS=Rhizobium meliloti (strain 1021) OX=266834 GN=idhA PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002264 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01408 all species →	GFO_IDH_MocA	Oxidoreductase family, NAD-binding Rossmann fold	Family	Interproscan
PF02894 all species →	GFO_IDH_MocA_C	Oxidoreductase family, C-terminal alpha/beta domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000683 all species →	Domain	Gfo/Idh/MocA-like oxidoreductase, N-terminal	Interproscan
IPR004104 all species →	Domain	Gfo/Idh/MocA-like oxidoreductase, C-terminal	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42840 all species →	NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006740 all species →	Biological Process	NADPH regeneration	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00010	iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase	EC:1.1.1.18 EC:1.1.1.369	Streptomycin biosynthesis	ko00521	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.