Gene detail

Detailed information of amic_s0032.g58.t1 in Acropora microphthalma

Genomic Location: sc0000032_pilon:889233...900612
NR annotation: XP_015765472.1, PREDICTED: M-phase inducer phosphatase-like isoform X2 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0032.g58.t1

AAGCGGGAAAAAACGAAAATGAGATCCCCAGGAAACCAACAACAAATCGCTCTGATTGGCTGATTATTGTTTTTCACTTGCATCGCGGGGAAAGTTTGAATAGCTGTGGTTGTACCGAAGTTCTGTTTATTATTCCGCTTTCTTCAGTTTAGTCGGTCACAAATCATGTATTAGTAGCTTAGAACCACCCTTCTTTCTCTTCACTTGACTTTGGGGGATTCTTCGGACTAAGTGGCCGTTTATTTTCGCGTTGGAATTGTTTGTAGACATAAATTTCTTCGAGTCAGTCGCTCGAGTTCTTGTCAGTTTCCAACATGGCCGGAGTAAAACCTAGAGCTGGAAGCTATCTTGAGTTGGATTTAACCACGAGGAGAAATTCATTTGACATTTCTTCTAAGAAAGTGCTTTCTCCAATGACGGAGTTAACGAAGAGTTTCGAAAACAGTTTGGGGAGGACTCCAAAAAGAAAACTTTCAATGTCTGGGAATGATTGTCCAACGCCAACTGCAGGCGCGATGTTTCAAAGGTCTCTCTCGTCTATTTCGAACGAATCGGGTTATTTCCCTGACTCTCCGACACCAAATTTTGCATTTGAGTCACCTTCCCTGGAGATTTTGAAGTACAATGCTGAAAAAAGGAAGCAAAGGCGACCATCTTTTAATCGGTGGCACTCACAACCGGTTGGAAATGGGGACTCTTCCTCTGAGAACAAGGAAAACATGGTATTGAACTTTAACTCAGATGAAGAAATCACTGGGAGTAGAAATGAGACAGGTGACTCTCCCAAGGATGGAAAATTCACATTCGCTGAACCGAAAGGTCCAGTGAGAGGAAAACTGCCCAAGCCATTTTCTGGAAGATCATTTTCTGACCCATCACCACAGGGTCAGTCTAGAGCATCATTTATCCCGTCATCACCTTCAGAATGTAGCAGCCAGGATAGTGGAACCTGCGAGTTTGATTTTGATATGGATGTAGACGATGATGGCTTCCTTGATGACTTAGTCCAACAGCAGAACAGAGAAAATGTTTGCTCAGAGTTGCCATTTGGAATAACAAAGCTTGTCAGTGCACCCTTGGTCAATGAGGAATCAGACAGTAAAATGAATGGTGCTGGGGATACACCAAGGGCATCGGAATCAAGTTATAAGCCCAGAGACTTGTTTAATGCTGGCAGAGATAGAGCCTATACTGTTGCCTCTGGGAGTCCATCCAATGAAAAGTGGTCATGCAGACAGAGATCGAATTCCTTTGCAATTAAGAGACCCAATCCTCTGGGAGATCGTAGTCCAAATGTCAGGAAAAAGCTCAGACAGAGATGTATGTCTGTCTTTGATGATGCAAGCAATCAGTCAACTTTACCTGATACAGCATCACTGTCATCACCACATTTTAACAATCATTCCCCCTTGAGGAGATCTCACTCAGAACCTTTTGAACATGGTGAGCTTGGGACTCTACTGGATACCTCAGGTCATAAAAATATGGTTGGGGACTTCAGTGGGCCCTACTCGCTTCCATCCATCCCTGGACAACATAATGATCTCAAATGTTTAAAGCCAGAAACGGTTGCACGCGTGTTGAATAATGAATATCCAACGGTGGAAGCTCATATCATAGACTGCCGTTATCCGTACGAGTACAATGGGGGCCACATTAAGGGGGCAAAAAATATCTATACGAAGGAGCAAATTCTTCGAGAGTTTCTTGAAAATCCGAAAAAGAGCCAGACAGGAAAGAAGACGATTTTAATATTCCACTGCGAGTTCTCGTCCAAAAGAGGACCCGATATGTCGCGCTTTCTCCGGAGTAGAGATCGCAGCCAACATCTGAATGAATACCCCAAGTTATCTTACCCTGAATTATATCTCATTGAAGGTGGTTACAAAGCATTTTTCAGCGAATGCAAGGAATACTGCGAGCCCCAATGTTATTTAACAATGTTAGACGAAAATCATTCGCAAGATCTTAAGAGGTTTTCTCAGTTTTCAAAGCGTTCGAAATCGGAAGGAAGCATACTTTCGAAAGGTTTCCGACCTGGTCTAGGATATCGTCGCTAGATTTTCGTCTGAAACTCGAAAACTGTCTGTCATTTTCGCCGTCGATTTCTTTCTTACTCGTGTCAAGCTGTCCTCTCCTTTTTGTTTCACATAATTTTGTTCCCATCTCTTATAAGACTTGTGAAACAACCTAATCATCTGTTTTACTCGACATTTGTAAAAAAGCTGCGATGAAGAACGCTTTCCGTCCCTTCTATTTTAAAGCATGACTCTCGTTCTTCGATGCCATCGTTTTTTTCTTCTTTTCCGTTAATATTTTTAAATTCGAAAAATTTTAATCGCGTGTATGAAAATGTATTAATGAAAACCTGTAAAGTATTTTCATCCTAGAATGTGTAATAAATGTAAGTTCTCCCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P20483	M-phase inducer phosphatase OS=Drosophila melanogaster OX=7227 GN=stg PE=1 SV=2
P48965	M-phase inducer phosphatase 1 OS=Rattus norvegicus OX=10116 GN=Cdc25a PE=1 SV=1
P30304	M-phase inducer phosphatase 1 OS=Homo sapiens OX=9606 GN=CDC25A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006452 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00581 all species →	Rhodanese	Rhodanese-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000751 all species →	Family	M-phase inducer phosphatase	Interproscan
IPR001763 all species →	Domain	Rhodanese-like domain	Interproscan
IPR036873 all species →	Homologous_superfamily	Rhodanese-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10828 all species →	M-PHASE INDUCER PHOSPHATASE DUAL SPECIFICITY PHOSPHATASE CDC25	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000086 all species →	Biological Process	G2/M transition of mitotic cell cycle	Interproscan
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0010971 all species →	Biological Process	positive regulation of G2/M transition of mitotic cell cycle	Interproscan
GO:0110032 all species →	Biological Process	positive regulation of G2/MI transition of meiotic cell cycle	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:1902751 all species →	Biological Process	positive regulation of cell cycle G2/M phase transition	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05866	CDC25B; M-phase inducer phosphatase 2	EC:3.1.3.48	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.