Gene detail

Detailed information of amic_s0033.g52.t1 in Acropora microphthalma

Genomic Location: sc0000033_pilon:678618...691405
NR annotation: XP_015753212.1, PREDICTED: homeobox protein MSX-2-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

amic_s0033.g52.t1

CACCAAAAAAGCATTCAAACCAGGACAAGCTAATGATCGCCAGGCATATTTTTCATCCTTGTCATTCATCATGGTCTGACAAGTTGATGTTTACCAAACCAGACCTGTTTACTAATGGGGATCGTTTTCCACCACTAAATGCTGATTACAAAGCCACTTGATCACTGAGCAACAACAGACGCTAATCGTCAAGCAGCAGCTTATCTTTGCCCTCAAAGTGATTCAGTAGCGACCTAAGAGCTCATGGCGAACCCGAGGTGATTTAGTTCAGAATTTTTTTTTTTTCACTGATTGCTGACAGATTAGAAAGAAAGCAGAATTGCAGTCAAATTCGTGAAATGCGGACATGCTGGATTTGTATCCAGGGAATATGTTGTTGGTCTGGTCTTTAATACGGCGGGGTGGCCTCACGGATGAAGAAGAAGGTTCAAAACTGGCAAGATAAACTCGCCGCGGTGAAACCATAGTTTGTGAACCTCGCATACCTAAGTTCGTTGAACTTTCAAATTCGTTTTTGACTGATTTGTTTGCCAAAGAATTTCACCCACGCCGTGGAATATATATTTAGAGATTTTGATCTGCTTACAATTACGAAGGAGTTCTTAAACAAAGCTAGCCAAATATTTCATGATCTAATTAACATTTTTCCTCAAAGTGACAAAACCCTTTGCCTCCACACGATAGAGTTTCAAACATTTACCGCCTTTAAAGTGGACAGTCATCTCATGTATTGCCTTAATTGGTTGTCAGCCTATTAACACAAACCGGATGCAGTGTCATAATATTTAGCAGCTACGAATTGTTCTATTGACGTGGATTATCTTATGGGCGTTTATATAAACTTACTTGTTTGTTAACGAGAGCAGAGTAGCATGGCGTCGTTTACAATAAACGCAATCTTAGGCCACTCACCTCCAAATTATAACAAAGCAAATGATTCTGTCCCTCCGGACGAAGCCTATGAGACGACAACGGATATTACAGAAGCAGATGACGTGGCAGAGAAAAGAGAGTTTGTCCAAGGACAGGAGGAGGAAAAAATGGATGGTTCTTTGAGTCACAATGATCTGAACTTCAACAAATCACGCAGAAGACGAACTGCGTTTACAAGCAGCCAGTTAAAATCTTTGGAACAAATGTTTAACGATAAGAAATACTTAACGATCAGCGAAAGGAACAACCTAGCTAAGAACCTTCATCTAACAGACACTCAAATCAAAACATGGTTCCAAAATCGAAGAACAAAATGGAAAAAACAAATGGCCCCTGACTTTGAGGCTAGCTTGCGGTGGGACGAGAGGAACTCATTGCCGTGTCATTTGCAGGCGGCGGGCTATCCTTGCTGCAGCCGAGAACTAGCGACTCCACTTTATCAAGTACCATTTCAGAACTTAAACACAACAAGGTTTTGTCCTTCCTCCAACCTTCAAATCGTCTACGGAAATATGAGTACCTTACAGCCATTTTCGCCTAGTTATGGCTACTTTAATGGTTAATCTCAGCCTAAACCGACCGTTTATGTCAATAATTGTCATTCATTCGTGGGCACGTACAAACTTTTATACAACTGGGCTGAAAACTACCGGTATAATATGGCAAGATGCTGATAGAAGCTTTCTTTCTTATCAATCTCTTTGGTTCAAATCTGTTTATCCGTGCAAGTAGAATGCAGATAGCTTTTAGTCATCTGCATTGAACGACGATCTCTTCAAGTGAAGCCACGAGGGAAGGAAATGAATTGATTAAACAGGTTTAATTTTCTCGCCATGTATAAATGCTTCATATGTCATAGCCGTGATTTCGACGACCATCACTGTCGCCTATGAGATGCCGAGGGAGCCGTACTCTACTGATCTAAGTTTCTCAAGACCTGTTTTATTGTGGAAATATTCAAGGGAAATTGCAATGTTAAAAGTCAAAAGTATTTAAAAGAATATTTAGCAGAAATGTAACAATGACGCTGTAAACAGAAATATGTGAAGCCTTACCTGTTTGTCTCTGCTTCCTTAAAAGTAGGGTCATGCTAATAGCCTTAATTAAGGAAATTCGATTTTTACGATTGAAAAAAGCTGTGAATAACTTTGTTTCCGACACCTAGAGAATAAGCGGAAGTATTTAAGTCTACGAACAATTATAATTCTGAACTAATCCGAGAATTTCACACGTAGTTTCAAGCAACAGCATTCCCAGTCGATCTAATTTTGGAATGTCCACGAGCGTACGTTTCGCTGTTTGGGCGGTATTCGTCAAAACTTCGGTCGTTGGCTGACAAAACTTAATTGCAGTGGAGAAACCGCAAGCATCTCCTCGTCCTAAAGGTCTGGTGTTGCAATCTGAAAAGCAGAAATGCAAAGTTAAACGGCTCTTCTGGTTTAATTAAATAAATCTTCTTTTTTTGG

Protein

Uniprot

Gene family

Uniprot term	Description
Q22909	Homeobox protein ceh-30 OS=Caenorhabditis elegans OX=6239 GN=ceh-30 PE=2 SV=2
P15858	Homeobox protein H40 (Fragment) OS=Apis mellifera OX=7460 PE=4 SV=1
Q9BZE3	BarH-like 1 homeobox protein OS=Homo sapiens OX=9606 GN=BARHL1 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR020479	Domain	Homeobox domain, metazoa	Interproscan
IPR050848	Family	Homeobox domain-containing transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24333	HOMEO BOX HB9 LIKE A-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan