Detailed information of amic_s0033.g99.t2 in Acropora microphthalma

Genomic Location: sc0000033_pilon:1145328...1164486
NR annotation: XP_015764817.1, PREDICTED: LIM homeobox transcription factor 1-beta-like isoform X5 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q60564LIM homeobox transcription factor 1-beta (Fragment) OS=Mesocricetus auratus OX=10036 GN=LMX1B PE=2 SV=1
P53413LIM/homeobox protein LMX-1.2 OS=Gallus gallus OX=9031 GN=LMX1B PE=2 SV=2
Q8UVR3LIM homeobox transcription factor 1-beta.1 OS=Xenopus laevis OX=8355 GN=lmx1b.1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002313 (this species only)
Transcription factor familyHomeobox · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046
all species →		HomeodomainHomeodomainDomainInterproscan
PF00412
all species →		LIMLIM domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR001781
all species →		DomainZinc finger, LIM-typeInterproscan
IPR050453
all species →		FamilyLIM/homeobox transcription factorsInterproscan
IPR017970
all species →		Conserved_siteHomeobox, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24208
all species →		LIM/HOMEOBOX PROTEIN LHXInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000977
all species →		Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0030182
all species →		Biological Processneuron differentiationInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0033.g99.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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