Gene detail

Detailed information of amic_s0034.g41.t1 in Acropora microphthalma

Genomic Location: sc0000034_pilon:591945...600958
NR annotation: XP_029209083.2, TATA box-binding protein-associated factor RNA polymerase I subunit B-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0034.g41.t1

ACGAATGTGGGACACAATAGGTGGTTTTACACTCAAGAGTATCAGCTATGCCGGTGTGTGCAATATGTGAAAGTGTGAATTTCGACTCAATAGATGGACTTTACTTCTGTCATGGTTGTGGAACACAGAGCCAGGACATAAGAGATGAAGATGCTGATGAGCAGTATGGCGACACAGCTCCAAATTTGCAAGTGTCGAAAAAAGGGAAAAGAGGACAAAAGAAGAGATTTTTTGCTGATAAGGGGAAACCTTGGTTTATGTATGAAGCATACCAACTTGTTATGAAAGCTCAAGTGGAATTCCTCGTAGGACGTGGAGTGAATCCAGCGCTGAAGGATGTAGTGTTCAAGTTGTGGTATAAGTACCTTCAAGTCACTGGTTGTGCTTTCACTGGCAAACGTGTTGGCACTTCACAGTTTAAAAGCACTATTTTTTACTGTCGTGATGCTGAGCTTCTTGGTGTGAATAAACGGAAGAAAAGACAAAAGGAGACCATTGAGGAGGAAGATTCAGAAGATTTAGAACTTAGTTCACACGTTAGTGATGGAGAATGCCATGAAGTTTGTGACCCTCTAAAAGCCCAACCAGAAGACACAAGTATTGAAGCTGATGATGTCAACAGCAAAGATGAATTATTGGTAGATGAAGGCAATGCTGGGAGCAGTGACGATGAATTTGTCGGATCCATTTCTGTTAAACAATCGAAATGTGTAAAACCATCAAACAGCCGATCACGAATTCGAAGTGGTCATGCTTCTCTCCAATTAACACTGGTTTTTTGCTATCTTGGCTTGCTCTGGATTGATGAACCTGTTTTCCTGAGTGACATAATAAGATGGGCAAAACAGGGCGAGTTTCCTTATTTCCAGGCAACAAGATATCTTCCGAGTTACATGAAATTTGGATATGAGGATTTTTCATGCCTATGCCCTAAAAGTGTGCCTTTAATAAGAACACTTCTCGCGTATTCATCACAAATTGCAAAACTACTGCGTCTTCCACATTTTCCAGATCAGAAGTGGACCACCTATACATCGCGCTTTATCAGAGATCTTCATCTTCCAGGCATACTGCATGGTCTAGTGCGAAAACTCATCGACAGGGTCCACATAAGCGGAGAAATCCACCCTATATTTGTCAGAACCACTGCAAGTTGCATTCCTCCCTTTGAAATGGCTGCAATGGCCTTTATTCTCGTGGCCATGAAAATTTGTTATGGGCTTGACGATAAAAGAGAGAGAGAACAGGAGACCATCGCAAAGAAGCAAATTTCAGATAAGAAGTCAGGCGCCACAATCCCTCTGTTCACTGATTGGCTGAAATGCTGGAAGCGCTGTGAGGCTAAGAAGTTCGAGAAAGGTATTCCTTGGACCGATGAGCAGTCCCAGCTCCTGCGCAACCCTTCAGTGTACGCTTCCTTTTGCAGATCGGATATTTTTGGCTCTTGGAAGCCAACCGACGAAGCTTACACTGGAATTGAGGCCAAAAATTATCGTATTAACCGCACAACAAACGAGGAAAGTCAAGAACGATACGCGCTACTTTTTAAGAGTCTCATGGGCAGAGAGAAAGAACAAGAGTTAAGTAGCGTAAACCGACCACTTGTGACAAGTTTTCCGGGCACGTGCGCACACGTGACGCAAAAGACAGCTGAACGTGGTTCATCAGACACGTGTTTGCATGAGATGGACGTGGGCGTTGGTGCAGAGGAGAGCTGTTTTAGTAATTTACGCTTCTGTCGAGTAGATGTTGTGGAACTTCTTGAAAACAGCAAAGATGCCAAGTATTTTTCTTACCTAGAAAATGGTCAAAGTCAGGAGACATTTCATAGTTCTTATAAAACGCTGCTGAACATATTGGCAGATCGGATCGAAGTGACAGCCGATGACTTACAGAAGAAAGTCCGCAAAATTGAGAGTGCTTTATTCTGCAGACTGGGTGCTCCCAGATTAAGGCTGTAAACATTTCCTGTCATCGCGATATTCGTCATTAAAATTCTCGTTTGATTTTACTTGTTTCCAGCTATTATTGATTCGCCTTATCCAGTTTTACACTGTAATAGATGTAAGCTCAAAGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZJR9	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Gallus gallus OX=9031 GN=TAF1B PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004741 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20645 all species →	Rrn7_cyclin_C	Rrn7/TAF1B, C-terminal cyclin domain	Domain	Interproscan
PF20644 all species →	Rrn7_cyclin_N	Rrn7/TAF1B, N-terminal cyclin domain	Domain	Interproscan
PF11781 all species →	zf-RRN7	Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033599 all species →	Family	RNA polymerase I transcription initiation factor TAF1B/Rrn7	Interproscan
IPR048538 all species →	Domain	Rrn7/TAF1B, C-terminal cyclin domain	Interproscan
IPR048540 all species →	Domain	Rrn7/TAF1B, N-terminal cyclin domain	Interproscan
IPR021752 all species →	Domain	Transcription initiation factor Rrn7, Zinc-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31576 all species →	TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001164 all species →	Molecular Function	RNA polymerase I core promoter sequence-specific DNA binding	Interproscan
GO:0001188 all species →	Biological Process	RNA polymerase I preinitiation complex assembly	Interproscan
GO:0005668 all species →	Cellular Component	RNA polymerase transcription factor SL1 complex	Interproscan
GO:0006360 all species →	Biological Process	transcription by RNA polymerase I	Interproscan
GO:0042790 all species →	Biological Process	nucleolar large rRNA transcription by RNA polymerase I	Interproscan
GO:0070860 all species →	Cellular Component	RNA polymerase I core factor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0034.g41.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.