Gene detail

Detailed information of amic_s0034.g47.t1 in Acropora microphthalma

Genomic Location: sc0000034_pilon:649370...668334
NR annotation: XP_029209046.2, SH3 and PX domain-containing protein 2B-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0034.g47.t1

ATGGAAGGACAGAAGACGGTACTATCGGCTTGTGTCACAGGGTCGTTACCTTCACAAGATGGAAAAGAGGCTTACAAAATCAACGTTGTCTTTTCGGATGGAAGCAAAGTTGTCCTTCGTAAGACATATGAAGAGTTTGTCGGTTTGCAGGGAGTCGTTTACGAGCTCCTCAAGAAAAAGGCTGGCTATTCAAGGAAAACATCGAGATCACTTGTGTCGCCTTTACCAGATCTCAACTCAACGCTTTCTCGGATTTTGTCCAAAGACACGGATCTTAAAAAGATGAGTAAAGTGGATGAATTTATGAAGGAACTGTTCACCCTGCCACAGGAAGTCACAGAAACTGAAACTTTTCTGACATTTTTTGGTGCCTTTCTGGATGTGAGTGGAAACTATGAACGGTTTGAAGAGGAAGAGGAACTAAAGAGGATAAACAAAGAGTCGCATGTTCTAAGTGGTAGTGATTCGCTGAGACCTCTGCCAACGTACAGTCCACTGCCCAAACGCAAGACAAGTAATCAGGAGAACTCATCTCAGATCCGAGAAAACGTGAACGATGAAACACGGCAAGAAATCTTTATGAAACTCAAGGAGAAAAGTCCAACTAAACAGGTTCCACAGATCCCCGGAAGAAGAATAACTTCCTGTACAGACGAGGACCTGGGGAACAGGTCTCCAAGGCTGGGTTTGATAAGAAGGCCATTTACAGTTGCTGCGAATCTTTCAGATATGAAAGGAGAAAACAAAGATATGACCGCTAAGTTCACAGAACGCCCATATAGTCCTGCTACGACACCAGTCTCCTCTCCCAGACCTGGAGTGAAAAAAAGACCTTTTAGCACCGGTCTTTCAATAGCCGACAAGCTGGATGAGATGAATGTGGCCGAAGTGGGAAGTAAACAAAGCCCTAAGGCTTCCCCAAGGGCTCCAATAGAGTTATCGCAGCAGCTGTCAAGGAGCCAGGAAAGCGTTACTCCCCCGCCAGAAAATCCCAGGGACAGCGACTCTGTGGTTAGCGTACGGAAGGAATCTCGCACTAGAAAGATCTCATCCCAAACAGGAAGGCTAAGCCCTCCAAAAATAAAGTACGTGGCCGTTTCATCATTTCATGGAGAAGAAAAGGGTGAAGTGGTTCTCGAGGAAGGTGAAGAGGTTGAAGTATTGCAGAAAGAGGCGAGTGGATGGTGGTACGTTAAAACTGAAGTCAGTGAAGGTTGGGCTCCCTGCGCTTTCCTGGTGCCAGTTCAGTCATCCAGGTCTTCGTCACCTGTGCCCGCAAGTCAAGAGCAGAGTACGGAAAGACAGGAAGAGAACTCTTCTGAAGGCCAAAAAGAGGAAGGAACAGTTAAGACACAGTCGATGACTCGAAACGCTGGCAGGAAGATATCAACCGAGATGAATCGAAGAGTAAAGTTTCTCACAGTTGAAGGAATCCAGAAACGAAAAAATCCGGACAAGAATTACGTCTACATTCTTAAAGTGGTTTGGTCTGATGGGACTATTAACATAGTTTACAGACAATGTAGCGATTTCTTTTACCTTCAGGAAAATTTAAGGAAGGAGTTTCCGTCCGCCATTGGAAAAGAAATCCCCGTGCTCAAAGGAAAGAAATTCACCGAAAACTGTCGCTTCTGCTTCAAGGATGGAACTTGCAAGAGAAGACAGTTTATGAATCAATTTTGCCATGAACTCATAAATGCCCCTGATCACATCTCAAAAAGTGCCGCTGTTATGACATTTTGCAGGCCTCGAGCAAGCGATTTGCTGCCTCACGGACAAAATGACAATAATGACAACAAGTCGTCTGAAAATAACGACGACAATGTTCAAATATCTGGACCCGTTGTATTCGAACAATACATAGTGGTTGCTGACTACAAAAAGAAAAACAAGAACGATATCTCACTGACTGCCGGAGAAACAGTTGATGTTGTAGAACGAAATGATTATGGCTGGTGGTTGGTTGATCGTGAAGGAGAGTTAGGCTGGGCACCAGCCTCCCACCTTGAACCTGTCGATGACGGATCAGAGATCACAACATCAAAGACATTTCCACCAGGGCAAGAGGAGATATACCAGTCCATTGAGAGCTATGAAGCTCGAGCTGAGGACGAGTTGTCCTTTGATGTTGGAGTCATGCTTAAAGTTGTGGAGAAAACTTTGGATGGATGGTGGCTAGTAAGATTTCAAGGCGATGAGGGCTGGGCTCCAGCCATGCACATGAAGAAAGTTGCCGATTCTAGCGATTCCTCTTTGTCATCGAGTGGACAATTAAACGATTTGGATATTGTTGCCTTCAACGGAGATTCTGAAGGTGGTGACGGGAAAGAAATGAAACGAACTCCTCCTACAAGGCGTAGCATGGTTCAAAAGTCAATCAGAAGGAAGCCAAAAGTAAGCACTTCGACTGTGCCGACTGAGGAAGCAATAAAGGAAGAAGCAGAACCAAGTGAAACAACAAATAAGAAAAATACTCGATCCATTTCAGTTCCTTCACAACCAACCAATTCACCCCGGGTGTCACCGCGAGCTTCCCCTCGACCAAAACTGAAATCCAGATCGAGTGACATGGTGCCAGGAGATGCATCACATCAATTGCTTAACCGTGAGGTATCGATATCGAGTGGATATGGGAGTTCACCGACCGGCAGCCTTACCTCTCTTGCCTCAGATGTTTTCCCAGCTCCGGAAGAAAGTCCAGCGCCAATCAAGAAGTGTGCTACGCTTCCAAGATTCGAAAATGTTACAGAAGAAAGCGGCATCCCTCGATCACACTCCGTTACGTCTTTTGCTCAGTACAAGAAGGAAAATGAGTCAGCGGTCAATGGCAACCTTTCTGTAGGTATGCGATCACCTTCTGGAAGATGGAGCCCTGTTCCAGCACCAAGGAAGACATCTACTTCTAGGCGAAGTCCGCTGGCAGGATCACCTGCAACGATCCAAGAGATGAAGATGTCTTCTCAACAGTCCTCTTTAGAAATAGAGAATGAAAATGCTTTCGACTTCAATAACAGCGCAGAAACGCCAAGGCGCATTTCACGCAGCCCCAGTCCCAACGAAAAGGCTGAGCTAGTGTTCCGTGCTCTCTATCCGTACATTTCCCAAGAAGATGGCGAAATTACATTCAATGTTGGAGATGTTGTCGAGGTTATTCAACGAGGACAAAATGGCTGGTGGTTATTAAAAAGTGATAAAGCTGGAATGGGCTGGGGTCCCTCCAATTACCTTGAATCCGTAGTCAATTAA

Transcript

amic_s0034.g47.t1

GTATATAAAGCACTGAAAAGTTTAGTCAACTGTCCTTATCGCTCGAGAGAAAAGAAGCGGAATTGCCTCGTTAAGGTTTCTCGTGACGCAGATACCGTGTCTACCCACGCATGTGCATCGTAGTCATAATTGTATAAGACGCGTCCATAGCACTAAATACAAGGCGAGATAATCATTAACTGTACCGAGGCAATGGAAGGACAGAAGACGGTACTATCGGCTTGTGTCACAGGGTCGTTACCTTCACAAGATGGAAAAGAGGCTTACAAAATCAACGTTGTCTTTTCGGATGGAAGCAAAGTTGTCCTTCGTAAGACATATGAAGAGTTTGTCGGTTTGCAGGGAGTCGTTTACGAGCTCCTCAAGAAAAAGGCTGGCTATTCAAGGAAAACATCGAGATCACTTGTGTCGCCTTTACCAGATCTCAACTCAACGCTTTCTCGGATTTTGTCCAAAGACACGGATCTTAAAAAGATGAGTAAAGTGGATGAATTTATGAAGGAACTGTTCACCCTGCCACAGGAAGTCACAGAAACTGAAACTTTTCTGACATTTTTTGGTGCCTTTCTGGATGTGAGTGGAAACTATGAACGGTTTGAAGAGGAAGAGGAACTAAAGAGGATAAACAAAGAGTCGCATGTTCTAAGTGGTAGTGATTCGCTGAGACCTCTGCCAACGTACAGTCCACTGCCCAAACGCAAGACAAGTAATCAGGAGAACTCATCTCAGATCCGAGAAAACGTGAACGATGAAACACGGCAAGAAATCTTTATGAAACTCAAGGAGAAAAGTCCAACTAAACAGGTTCCACAGATCCCCGGAAGAAGAATAACTTCCTGTACAGACGAGGACCTGGGGAACAGGTCTCCAAGGCTGGGTTTGATAAGAAGGCCATTTACAGTTGCTGCGAATCTTTCAGATATGAAAGGAGAAAACAAAGATATGACCGCTAAGTTCACAGAACGCCCATATAGTCCTGCTACGACACCAGTCTCCTCTCCCAGACCTGGAGTGAAAAAAAGACCTTTTAGCACCGGTCTTTCAATAGCCGACAAGCTGGATGAGATGAATGTGGCCGAAGTGGGAAGTAAACAAAGCCCTAAGGCTTCCCCAAGGGCTCCAATAGAGTTATCGCAGCAGCTGTCAAGGAGCCAGGAAAGCGTTACTCCCCCGCCAGAAAATCCCAGGGACAGCGACTCTGTGGTTAGCGTACGGAAGGAATCTCGCACTAGAAAGATCTCATCCCAAACAGGAAGGCTAAGCCCTCCAAAAATAAAGTACGTGGCCGTTTCATCATTTCATGGAGAAGAAAAGGGTGAAGTGGTTCTCGAGGAAGGTGAAGAGGTTGAAGTATTGCAGAAAGAGGCGAGTGGATGGTGGTACGTTAAAACTGAAGTCAGTGAAGGTTGGGCTCCCTGCGCTTTCCTGGTGCCAGTTCAGTCATCCAGGTCTTCGTCACCTGTGCCCGCAAGTCAAGAGCAGAGTACGGAAAGACAGGAAGAGAACTCTTCTGAAGGCCAAAAAGAGGAAGGAACAGTTAAGACACAGTCGATGACTCGAAACGCTGGCAGGAAGATATCAACCGAGATGAATCGAAGAGTAAAGTTTCTCACAGTTGAAGGAATCCAGAAACGAAAAAATCCGGACAAGAATTACGTCTACATTCTTAAAGTGGTTTGGTCTGATGGGACTATTAACATAGTTTACAGACAATGTAGCGATTTCTTTTACCTTCAGGAAAATTTAAGGAAGGAGTTTCCGTCCGCCATTGGAAAAGAAATCCCCGTGCTCAAAGGAAAGAAATTCACCGAAAACTGTCGCTTCTGCTTCAAGGATGGAACTTGCAAGAGAAGACAGTTTATGAATCAATTTTGCCATGAACTCATAAATGCCCCTGATCACATCTCAAAAAGTGCCGCTGTTATGACATTTTGCAGGCCTCGAGCAAGCGATTTGCTGCCTCACGGACAAAATGACAATAATGACAACAAGTCGTCTGAAAATAACGACGACAATGTTCAAATATCTGGACCCGTTGTATTCGAACAATACATAGTGGTTGCTGACTACAAAAAGAAAAACAAGAACGATATCTCACTGACTGCCGGAGAAACAGTTGATGTTGTAGAACGAAATGATTATGGCTGGTGGTTGGTTGATCGTGAAGGAGAGTTAGGCTGGGCACCAGCCTCCCACCTTGAACCTGTCGATGACGGATCAGAGATCACAACATCAAAGACATTTCCACCAGGGCAAGAGGAGATATACCAGTCCATTGAGAGCTATGAAGCTCGAGCTGAGGACGAGTTGTCCTTTGATGTTGGAGTCATGCTTAAAGTTGTGGAGAAAACTTTGGATGGATGGTGGCTAGTAAGATTTCAAGGCGATGAGGGCTGGGCTCCAGCCATGCACATGAAGAAAGTTGCCGATTCTAGCGATTCCTCTTTGTCATCGAGTGGACAATTAAACGATTTGGATATTGTTGCCTTCAACGGAGATTCTGAAGGTGGTGACGGGAAAGAAATGAAACGAACTCCTCCTACAAGGCGTAGCATGGTTCAAAAGTCAATCAGAAGGAAGCCAAAAGTAAGCACTTCGACTGTGCCGACTGAGGAAGCAATAAAGGAAGAAGCAGAACCAAGTGAAACAACAAATAAGAAAAATACTCGATCCATTTCAGTTCCTTCACAACCAACCAATTCACCCCGGGTGTCACCGCGAGCTTCCCCTCGACCAAAACTGAAATCCAGATCGAGTGACATGGTGCCAGGAGATGCATCACATCAATTGCTTAACCGTGAGGTATCGATATCGAGTGGATATGGGAGTTCACCGACCGGCAGCCTTACCTCTCTTGCCTCAGATGTTTTCCCAGCTCCGGAAGAAAGTCCAGCGCCAATCAAGAAGTGTGCTACGCTTCCAAGATTCGAAAATGTTACAGAAGAAAGCGGCATCCCTCGATCACACTCCGTTACGTCTTTTGCTCAGTACAAGAAGGAAAATGAGTCAGCGGTCAATGGCAACCTTTCTGTAGGTATGCGATCACCTTCTGGAAGATGGAGCCCTGTTCCAGCACCAAGGAAGACATCTACTTCTAGGCGAAGTCCGCTGGCAGGATCACCTGCAACGATCCAAGAGATGAAGATGTCTTCTCAACAGTCCTCTTTAGAAATAGAGAATGAAAATGCTTTCGACTTCAATAACAGCGCAGAAACGCCAAGGCGCATTTCACGCAGCCCCAGTCCCAACGAAAAGGCTGAGCTAGTGTTCCGTGCTCTCTATCCGTACATTTCCCAAGAAGATGGCGAAATTACATTCAATGTTGGAGATGTTGTCGAGGTTATTCAACGAGGACAAAATGGCTGGTGGTTATTAAAAAGTGATAAAGCTGGAATGGGCTGGGGTCCCTCCAATTACCTTGAATCCGTAGTCAATTAATTACTTAAAAGTCCCTTTTAACATGAGAGGAAAAGAAATGCCCATATGAGCATCATATCTATTGCGCACAACTATGGCAAATGAAAAACGACTCGCACTTTTCTGAACAGGGCTCTTAGACTTGCTCAGAGGACTGCTTTCGGGCTAAGTATGCCAAAGTAGCTACAATAATGAATTATTTGTTATTTAAGTTAAGGAAAGAATGTTTGCAACATCATAGAACGGAATTGAAAGTGAGGGAACGTGTATTCGTGCGGGGTCCCATTTTTCTCAAAAAAATAGGAAACTTTTATGGTTCCATACGAAAGCATCTTAGGGTTCCAGGTTTATTGGAGGTGTCTCTGCTCCGATATTTGACAACATTATAATGATATTTGGTTGTGTATTTGTAAATAATGAATCTTAAGAGAAAGCATCAATTTATAAGCGAATTTCTTGTTGATGAAAAAAGAAACAAACAAGAAATCAGAAAAATAATAGAGCAATGTAAAAAAGAGTCAATTATTCTTCGTTCAGGCGCGTTAAAACCGTTTCACTTATTTCTTGCAAGCAGATGGAATACACTTTCATGCAAATGCAGCTTGCAATTGCGCAAAACGGCACGTAATGCTTTATAGATGCACGATTTTTTTAATGCGTTACTTTTCGTGTGTTGTATTTGCTGAGGTCTCTCTTGAAAGTCTAGACGTGTGACAAAAATGTTTGCATGGTCGTAAAATTCCCAGCTTTGAGTTCGTTGAGGCAAAATTTTCGTTTATGAACAGTGTGTATTAACTGGTTGACCTTGCAAGGAATTATTATTTTATATTTATTTAAATTATATTCATTGTGTAAAAGGTCATAGCAGTACATTTTTTCCAAAGTGTATCATTATTTAAAACTTTTCACTTATTTAAGTTGATACACATCACATGTCATTGTCAACGTAAACAGAAAGGATTACTAAGATTGTTTAAGCAAGGCGTCGGGTGTGGGTGAATTATGTGGAAGCTTCAAAGAATAAGCAATATTAAAAACCGAATGTTAAAAAATAAAGCATTTATATTTTCAAGGATATAGTGTAATAAGAAACTTACTTCACCCAGTATTAAAATAAAATAATTAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1LYG0	SH3 and PX domain-containing protein 2A OS=Danio rerio OX=7955 GN=sh3pxd2a PE=3 SV=2
A2AAY5	SH3 and PX domain-containing protein 2B OS=Mus musculus OX=10090 GN=Sh3pxd2b PE=1 SV=1
Q5TCZ1	SH3 and PX domain-containing protein 2A OS=Homo sapiens OX=9606 GN=SH3PXD2A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007163 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan
PF00787 all species →	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR051228 all species →	Family	NADPH Oxidase and PX Domain-Containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15706 all species →	SH3 MULTIPLE DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016176 all species →	Molecular Function	superoxide-generating NADPH oxidase activator activity	Interproscan
GO:0042554 all species →	Biological Process	superoxide anion generation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24032	SH3PXD2; SH3 and PX domain-containing protein 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.