Gene detail

Detailed information of amic_s0034.g89.t2 in Acropora microphthalma

Genomic Location: sc0000034_pilon:1162857...1181378
NR annotation: XP_029212007.1, protein boule-like isoform X2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0034.g89.t2

CAGGTTTGGATGAGAATTAGTCCACCTCCCCGACCTTCTTCACCTCAAACACTGCGACGAAACGTAAGTCTGACTTACAACATAAAATTTACAGAATAGATTAAGTATGATGGCAAAACTGGAGAAACTAAGGTAGCTAGAAGCTAAGACAAAGAAAAACAAGGAAAAGAAAGTGGACAAAAAAGAAGAAGAGCCATTCAAAAGATTAATTGGTGTCAACTGGACGCATAAATACCTGTGAAGCCAGCGGTGCAGGAATTAGTTACCGCGTGCACTTCCATCGGGTTGAACACTGAGAAATTCTGAGGAGCACTTTACAATGGACCACCAGTCAACGTATTTATTTGGGCGAAGATTCAAGAATCGTTTGTTCGTTGGAGGACTTCCTCTTAATACCACGGCCAAGGAGTTGGCCGAATTTTTTTCCCTATTCTGCCCGGTTGTTGAAGCAAAAGTAATAAAAGATGAAAACCACGTTCCTAAGGGGTATGGCTTTGTTACATTTCATAATGAGGAATCTGTGCGCCAAGTCACTGATATGGGAACCCTATTTTTAAGAAATAAGAAGTTGAACTTGGGACCAGCTGTTAAAAAGCAGGCAACTGCAAATGATCCCCCAGAACTGGTTGTAGTGAATACAGTCAACATGCGTGGGGAGTACTTTTATCCAGTAACAGTCCCACAGTATTATCAGTATCCAAGTTACACTTGCCCTCCAGCAGGGGTAATTTATGAAAATCAGCAACCTACAATGATGCCAGTCATTCCATACCAAGCAGTTGAACAACCATGTGTGCAGCCCTCATTAATATCTGTGCCATGTGCAAGGCAAGATTTCCAAATTGCGCAGTCAGCAATTTCTAGACGTCGGAAAAACATGCCACCAAGGTTCAGGCCAAGACAAAATTAAGCAGATGTGAAAGCACTTATTAACTTAACGAGCATTGTGTATTAATCGACAAAGCATTGAAAACAGATCCAGAGCTGCAAAAATTGAAACAGTGTTAATTTCTGATTAATTCCAATAATAATGACAGAAGGGCTTGGCCACAATTATTGCTAGCTTCCGCAGACATTTGCCTGATTATGTGAATCCTAACCTTCTGAGAAACTGGCTCCTCTTGAACTTGTGAAATAATCTTTGTACTTACTGTCATACAGTATTCAAAGTGAACTTTAAGAGATTATGCTAGATGACTCCAGAATGTAAATATCTTTATGTGATGAGAACATGCCAGTCACATTGATTTGCATTAATTTCACCTGCCACTATTGCAATTTTAATGTTTTTACATGTAATTGCCTGCTGATCAACAATCTTTTTAAGCAATATCCTTACATTTTGTATTCCTAGCCTTTATTTTTACTATTGTACCTCTTACCAGTAATTATTACTGATGATGACAGACACAACTGTTGGGATAAGAAATTGTATCCAAATCTGAAGACTTTAGCATCCAATCAATAAATCAATATTCTGTAAAATTTAGCATGCTTTTTAAGAATATCTTCCATGGCAGGTTTGAAACTATTGTAGAGTCATAAAGGTGAAAGTGATTCCATTTTCCATGCACCCCCTATGTGTGGTCAATAATAATTTTGCTACAATttattattattattattattattattattattattattattaatgttattattaCAAAAAGTTGACAAGTCAAAAGTACTAAGTTTCGACGGATCTATCAATGATGTAACCCAAGATCAAAGAACTTTCAATCAGCAATGCTTCATGAGGGATGCAGATGGTAAAATTGAATCACCGAACCTCTAGAACAAATATCTTATTTTGGATAATAAGGTTGTGAACTTCCATATACCGTGGGGGGCGAGGTTTTTCAACAGTCATAAAATGGTGTACCATTGGCCTTCATTTGGAAAGTTATTCAATTTCAAGTCAGGCTGTAGGGGAGAATTAACACCTAAAGTTGATGCATATTGTAACCAAATCAGGAAATTCATTTATCTTGCCTAGTGCATTATTTTCATACGTGTATAAGCTATGTGGCTGTTACGGAATGATTGTTGACCAGCCGTTTTGAAAACATTAACTCATAAACAAAGGTGATACGAAAATTTGATCGCCTTGTATTTCATTATGTATTCTTAAAAAGGAAATGTTTGATACCTATCTCATTTTGTCTTGGATTGTTTTTCATTTCCATTTCTGCGAGAGCCGCGTGTCATGAAACCCTAAACAAAATGTGCCGTCGACAATTTCTTACCGCTGGGCTACGAAAGCCGAAGTTCCCTTCGTGCGTTCCGAATTTGCGGTCGACTCCCTGTGCTCATCCAATATTGAATGAATAGGTACACATCTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q24207	Protein boule OS=Drosophila melanogaster OX=7227 GN=bol PE=1 SV=1
Q8N9W6	Protein boule-like OS=Homo sapiens OX=9606 GN=BOLL PE=1 SV=2
Q8WP23	Protein boule-like OS=Macaca fascicularis OX=9541 GN=BOLL PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000963 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11176 all species →	BOULE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008494 all species →	Molecular Function	translation activator activity	Interproscan
GO:0045948 all species →	Biological Process	positive regulation of translational initiation	Interproscan
GO:0070935 all species →	Biological Process	3'-UTR-mediated mRNA stabilization	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0034.g89.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.