Gene detail

Detailed information of amic_s0035.g13.t2 in Acropora microphthalma

Genomic Location: sc0000035_pilon:342737...353415
NR annotation: XP_029193598.1, TNF receptor-associated factor 5-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0035.g13.t2

GGCGTTTTGTTCTACTGGAGACAGCTTTCAATTGCATGTGTGTTTGGTGTTGATGGGTATAGCCATGTTCTCTTTAACCGCGGAAGTCTTCATAATTTAAAGAATTTAACGCCAACTTGATATTCCTCACACAAATATTGGTGGGCTGCGTGTGGGAGCTCCACATTTCACTTTGTCTTTCTCTTGATTACACCTGATGACTGATATTAAATAAACCGATTTTTAAATTAGGGTGTGTCTCTAAAAGCACAACAGGAAAAATAAGACTTCATTTGTCAACGTTTGAAGTCAGGCCAGGCGAAAACAATGTGCAGGCTATCTTAGTTTGCCCCTTTCCGCTTCACGGTTCCCAGAATAGCTTGAAATCTCTCTCCTTCTGCCTACATTTTTTTGTGACAATTCAAGCAGGCAAGTGACACTTTCGCCGCTTGAATCATCAGAAGCGGTAGAAAATTGACGCCCGAGGTTTTCCCTTTGTAAATATCGGCCAATTTGAAGTTTTTCACTTCATTACGGAAAGATTTCGGACACCGCTTACACAGACTTAATTATCCTGGCCTTGGCTTGTTGTTTCCCAAATCAACGATGTCTTCGCAGTCAGGAGCGTTGGTTGAGAGCAAGTCCTTCGCACTAACGAGTAAAGGACAAGATAAACAAATGGGTAGAAGTCAACTTCGCCCTAATGAGTCAGTGGAAACGGAGGCGATTCAAAGATTTCTATCCATTTGTTTGAAACAGTTCTTTATTTGTTCGCAAGATGGTTCCGAAGAAAGCGGCTCTTCTCCCGCCGATTCTGCAAATGAAAACGAGATGTTACGTGAGACCAGTGAGGAGATATTTCGATTGAACAGTGATGATATCACCTGCAGATTTTGCAAAGATGCAATGCTCCCGGTAACTCTGGCCTTGAAGTTGAGCGGTGCCTCGTGTCACAAGAGCCATTTAGACGCCTGCCCGCTATACCCAGTGGAATGTCCTAATATGTGCGGCGAGATGGCGGTTCCCAGAGAGAAGCTCACGAACCACATCAAGGAAAATTGTCCGAACAAACAAGAACACTGCCCTCACAAAGACGTCGGATGTTCATATCAGGGTCCCAAGAGTGACATGCAGAAACATCTTCAAGAAAAAACGGAATATCATCTTGAGATGGCCTTAGAAATAATTAAAGAGCAGAAAACAGAGCTTGGAATTCAGAGAGGCCGCCTTCGAAAACAAGAGGAAAACGTAGCACACCTCATGGAGAGTATTACGAAGCTGACGGCGATGTTTGAAGAGACAATAAAGAAAAACGCAGAGCAAGAAAAGGCCATCAATCGCTTGTCTGAACAAATGAAAGAACAAAAGAAACATCAGTCAAAACACGAAAAAGAGCTTAAGAGCAGAATAACGGAATTAGAAAATAGTGGCTCAGAAATTGCACCCCAAAATGCACTTTTTCGTTATCCAGGACTCAATGGGTATGGGGAACTTGTATGGCGTATTTCAAGCTTTCCTCGAAGATTACAACGTGTTCAGTCGGGTCGCGGCGATGACCCGATGACAAGCGAACCGTTTTACACATCGGCATTCGGTTATAAGATCGCAGTCTGGGCTTACATAAACGGTAGAGGTAAAGAAGAAGGAATTTGTTTATCTTTATATGCATGCGTCATGTCTGGGGAATATGACGCGACTCTCCATTGGCCAATTCGACCGCGTTACACCTTTTCCTTGTTAGATCAGAATCCAGACTTTGAAGCAAGGAAAGATCTCACGCGGGTGCGCAAAGTCCACGATATCAAGCGTGATGATACGAGAAGAAAAGGCATAGACAGACCTGGTCGCGATGAAAGAGCTATCATTGTAGGATTTGATGATTTCATTAAACACGAAGAACTCGAAGCGGGAAACTTTCTTGTGGAGGATTCTCTGTTCGTCCGTGTTTTAGTGGACATTTCTGACTCATAGTAATTCCACTTGTCGTACAACAAAACCGTGTATCTCGCTGggcaacggcaacgacgacgtcagaattaaaacatgatctgattggttgaatgaggaaaaataatcgtgctgcacgtgcggcacgcagtttggtacaattctttcactttgtctgccaaacaacaacgaaatttccaaatttaaggtttaaacgacaacgtaaacacacaaaagtaaatctttgattttctacattaacttcaacggcgcttctgctagtccatttgcagcgtgctctgtcaacaataaaaaaaggcaaggaagaggcattaacaaaatagtcattatttcctaaacgtttattttaaagtaacgttttcgttgccgttgtcgCTCAAGCTTCCATTTGCTGCCTTCGAAATCTGAGACTATCTTAAACAAAACACTAAGAATAAACCTGGTTGTCCTCCTCGCTACGATGACTTTGTTCTTTTTTTGCCTTTCTAAAATATCCTGCTTTCATTTCCTAGCTTTCTTTATTTCTCCCTTGTTTTGGGAGAGCCAGGCAGATGGGGATGGAAAGGTCTCCGTGTTATATGGCTCTCGACTCGACCTCTCCTCCCTCTCTCTTTTTATTACCACAGAAGCTAGGTTAGTCACATGACCACCTTCAATGCAAAAGAAAGGGAGCCTGGATTCAAGAATGACGATTTGGGTCTCTTTTCGAGACAACAACCAGCCCACAAGTCTTCGTTGAAAGTGTCTTTCATTCATCTGTTGCCAAATACAATAAAATCACGAATTATTGAACTACAGTTGCTGTCAGCACAGCTGTACAAATGCTTCTATAATACAAAAGTACAAAAACATTGAGTACGTCGTTTCATATTTTAGCACTTACGCGTATAAATAAAGTCTACTTTATCTAGTTAATTCTGTTGTTGTTTCTGATTCTTAACAagagagctttagatccaacaacgagaacgaaaacgagtacgaatttgtttgcttagccattgttcgcgtacatagttgtctatgacatctaaagcaggcggaaaactcgttgtaggccgctggtcaacaacgacattttgaggaaaagtcgacttcacgagaacgaaatttctaaaggtgagttctggactttcaactcatcaaaaatcactaaggcgccttcttcgtcaattgtcatCCATATTAAGC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002370 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21355 all species →	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan
PF02176 all species →	zf-TRAF	TRAF-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049342 all species →	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR008974 all species →	Homologous_superfamily	TRAF-like	Interproscan
IPR001293 all species →	Domain	Zinc finger, TRAF-type	Interproscan
IPR002083 all species →	Domain	MATH/TRAF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131 all species →	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005164 all species →	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0009898 all species →	Cellular Component	cytoplasmic side of plasma membrane	Interproscan
GO:0033209 all species →	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534 all species →	Biological Process	protein K63-linked ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0035.g13.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.