Detailed information of amic_s0035.g63.t1 in Acropora microphthalma

Genomic Location: sc0000035_pilon:1051426...1059284
NR annotation: XP_029193613.2, neuropilin-2-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P14780Matrix metalloproteinase-9 OS=Homo sapiens OX=9606 GN=MMP9 PE=1 SV=3
P50282Matrix metalloproteinase-9 OS=Rattus norvegicus OX=10116 GN=Mmp9 PE=2 SV=1
P3343672 kDa type IV collagenase OS=Rattus norvegicus OX=10116 GN=Mmp2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008464 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00594
all species →		GlaVitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domainDomainInterproscan
PF00754
all species →		F5_F8_type_CF5/8 type C domainDomainInterproscan
PF00040
all species →		fn2Fibronectin type II domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017857
all species →		Homologous_superfamilyCoagulation factor-like, Gla domain superfamilyInterproscan
IPR000294
all species →		DomainGamma-carboxyglutamic acid-rich (GLA) domainInterproscan
IPR013806
all species →		Homologous_superfamilyKringle-like foldInterproscan
IPR000562
all species →		DomainFibronectin type II domainInterproscan
IPR000421
all species →		DomainCoagulation factor 5/8 C-terminal domainInterproscan
IPR036943
all species →		Homologous_superfamilyFibronectin type II domain superfamilyInterproscan
IPR008979
all species →		Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR035972
all species →		Homologous_superfamilyGamma-carboxyglutamic acid-rich (GLA) domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24543
all species →		MULTICOPPER OXIDASE-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0005576
all species →		Cellular Componentextracellular regionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0035.g63.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP