Gene detail

Detailed information of amic_s0035.g68.t1 in Acropora microphthalma

Genomic Location: sc0000035_pilon:1156932...1163805
NR annotation: XP_044178621.1, rac guanine nucleotide exchange factor B-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XFX0	Transgelin-2 OS=Rattus norvegicus OX=10116 GN=Tagln2 PE=1 SV=1
P37802	Transgelin-2 OS=Homo sapiens OX=9606 GN=TAGLN2 PE=1 SV=3
Q9WVA4	Transgelin-2 OS=Mus musculus OX=10090 GN=Tagln2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000602 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00402 all species →	Calponin	Calponin family repeat	Repeat	Interproscan
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003096 all species →	Family	Smooth muscle protein/calponin	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR000557 all species →	Repeat	Calponin repeat	Interproscan
IPR050606 all species →	Family	Calponin-like	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47385 all species →	CALPONIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20526	TAGLN; transgelin	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.