Gene detail

Detailed information of amic_s0035.g68.t1 in Acropora microphthalma

Genomic Location: sc0000035_pilon:1156932...1163805
NR annotation: XP_044178621.1, rac guanine nucleotide exchange factor B-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q5XFX0	Transgelin-2 OS=Rattus norvegicus OX=10116 GN=Tagln2 PE=1 SV=1
P37802	Transgelin-2 OS=Homo sapiens OX=9606 GN=TAGLN2 PE=1 SV=3
Q9WVA4	Transgelin-2 OS=Mus musculus OX=10090 GN=Tagln2 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00402	Calponin	Calponin family repeat	Repeat	Interproscan
PF00307	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003096	Family	Smooth muscle protein/calponin	Interproscan
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan
IPR000557	Repeat	Calponin repeat	Interproscan
IPR050606	Family	Calponin-like	Interproscan
IPR001715	Domain	Calponin homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47385	CALPONIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007015	Biological Process	actin filament organization	Interproscan
GO:0015629	Cellular Component	actin cytoskeleton	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20526	TAGLN; transgelin	-	Membrane trafficking	ko04131	deepkoala